Results 21 - 40 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26493 | 5' | -52.6 | NC_005357.1 | + | 33962 | 0.74 | 0.34907 |
Target: 5'- gGCUGCGgcAUCGcaggccaccuCGACGCCGacaucGCGCCg -3' miRNA: 3'- -CGACGCuuUAGCu---------GUUGUGGC-----CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7137 | 0.74 | 0.365692 |
Target: 5'- --cGCGAAGUCGuCGGCugCGGCcuggaugaccaggGCCg -3' miRNA: 3'- cgaCGCUUUAGCuGUUGugGCCG-------------CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 37593 | 0.73 | 0.384691 |
Target: 5'- cGCUuuccGUGAAuUCGACGacgGCGCCGGCcCCg -3' miRNA: 3'- -CGA----CGCUUuAGCUGU---UGUGGCCGcGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 41431 | 0.73 | 0.384691 |
Target: 5'- cGCUGCGGugaaCcACGGCACCGGCcaggcgGCCa -3' miRNA: 3'- -CGACGCUuua-GcUGUUGUGGCCG------CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 23501 | 0.73 | 0.393965 |
Target: 5'- aCUGaCGAAAaaCGcCAGCGCgGGCGCCg -3' miRNA: 3'- cGAC-GCUUUa-GCuGUUGUGgCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 23954 | 0.73 | 0.403382 |
Target: 5'- --gGUGGAcgaAUCGGcCGACgccGCCGGCGCCg -3' miRNA: 3'- cgaCGCUU---UAGCU-GUUG---UGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 41732 | 0.73 | 0.41294 |
Target: 5'- --gGCGguAUCuugGGCGGCccgGCCGGCGCCg -3' miRNA: 3'- cgaCGCuuUAG---CUGUUG---UGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 12050 | 0.73 | 0.41294 |
Target: 5'- aGCgUGuCGAAGUCGAUGGCGCCgauGGUGUCc -3' miRNA: 3'- -CG-AC-GCUUUAGCUGUUGUGG---CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 11494 | 0.73 | 0.422637 |
Target: 5'- cCUGCGAcaccgcAAagGGCAGCGCCuGCGCUg -3' miRNA: 3'- cGACGCU------UUagCUGUUGUGGcCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 35170 | 0.73 | 0.43247 |
Target: 5'- aGCUGCacaAGGcCGGCGACAUCGGCccgcGCCa -3' miRNA: 3'- -CGACGc--UUUaGCUGUUGUGGCCG----CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 38548 | 0.72 | 0.442435 |
Target: 5'- gGCgGCGA---CGGCAGCGCggccuacagcgaCGGCGCCu -3' miRNA: 3'- -CGaCGCUuuaGCUGUUGUG------------GCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 37084 | 0.72 | 0.451513 |
Target: 5'- gGCUGUcgccaacGAcAUCGACAGCgugguauccgugGCCGGCGaCCu -3' miRNA: 3'- -CGACG-------CUuUAGCUGUUG------------UGGCCGC-GG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 21664 | 0.72 | 0.452528 |
Target: 5'- cGC-GCGAugAGUCGagcgcggcGCAGCGCCucuacGGCGCCa -3' miRNA: 3'- -CGaCGCU--UUAGC--------UGUUGUGG-----CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 27649 | 0.72 | 0.452528 |
Target: 5'- --aGCGAcaucgugaagcaGAUCGACAccgacACGCUGcGCGCCa -3' miRNA: 3'- cgaCGCU------------UUAGCUGU-----UGUGGC-CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 24399 | 0.72 | 0.462745 |
Target: 5'- cGCUGCGcAAGUUGAagaAGCgcaGCCGGC-CCg -3' miRNA: 3'- -CGACGC-UUUAGCUg--UUG---UGGCCGcGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 32776 | 0.72 | 0.472044 |
Target: 5'- gGCgGCGAAGuccgcccUCGGCAccuCGCUGGUGCUg -3' miRNA: 3'- -CGaCGCUUU-------AGCUGUu--GUGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 17603 | 0.72 | 0.473083 |
Target: 5'- gGCUGCGc-GUUGuCGAUACCGGCcucgauguuuGCCg -3' miRNA: 3'- -CGACGCuuUAGCuGUUGUGGCCG----------CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 23953 | 0.72 | 0.482485 |
Target: 5'- cGCccgGCGAGGUCGGCAuuugccgauucauGCGCguauuCGGCGCa -3' miRNA: 3'- -CGa--CGCUUUAGCUGU-------------UGUG-----GCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 18456 | 0.72 | 0.483535 |
Target: 5'- --cGUGAcGGUCG-CGGCGCCGGCGgCg -3' miRNA: 3'- cgaCGCU-UUAGCuGUUGUGGCCGCgG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7207 | 0.72 | 0.483535 |
Target: 5'- aGC-GCGAuguccaCGGCAGCAUCuGCGCCg -3' miRNA: 3'- -CGaCGCUuua---GCUGUUGUGGcCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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