miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26493 5' -52.6 NC_005357.1 + 32005 0.66 0.810672
Target:  5'- aGCUGUugGAAAUgaaaagUGGCGAggcCAUCGGCGCg -3'
miRNA:   3'- -CGACG--CUUUA------GCUGUU---GUGGCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 25493 0.66 0.810672
Target:  5'- cGCUGC----UgGACGGCGCC-GUGCCc -3'
miRNA:   3'- -CGACGcuuuAgCUGUUGUGGcCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 29001 0.66 0.810672
Target:  5'- cCU-CGuuAUCGACGuagGCgACCaGGCGCCg -3'
miRNA:   3'- cGAcGCuuUAGCUGU---UG-UGG-CCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 27215 0.66 0.8097
Target:  5'- -gUGuCGAuGUCGGCGGaaaucgcCAUCGGCGCa -3'
miRNA:   3'- cgAC-GCUuUAGCUGUU-------GUGGCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 39438 0.66 0.8097
Target:  5'- uGCUGCGcuauUCGGCGGCaACUGGaacaacaCGUCg -3'
miRNA:   3'- -CGACGCuuu-AGCUGUUG-UGGCC-------GCGG- -5'
26493 5' -52.6 NC_005357.1 + 28185 0.66 0.800872
Target:  5'- aGUUGCGc-GUgGACGACGCacuuaaccGCGCCa -3'
miRNA:   3'- -CGACGCuuUAgCUGUUGUGgc------CGCGG- -5'
26493 5' -52.6 NC_005357.1 + 13625 0.66 0.800872
Target:  5'- aGCauCGGuagCGGCAGCAaguCCGGCGCg -3'
miRNA:   3'- -CGacGCUuuaGCUGUUGU---GGCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 13392 0.66 0.800872
Target:  5'- cGCcgGUGGGuAUCGACcuGGCcgaaGCgCGGCGCCu -3'
miRNA:   3'- -CGa-CGCUU-UAGCUG--UUG----UG-GCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 4250 0.66 0.800872
Target:  5'- --gGCGuAGUCGGugccggccguCAGCGCCGGCauggugaugGCCg -3'
miRNA:   3'- cgaCGCuUUAGCU----------GUUGUGGCCG---------CGG- -5'
26493 5' -52.6 NC_005357.1 + 41153 0.66 0.800872
Target:  5'- --gGuCGAGGgcCGGgAAUACCGGCGCUc -3'
miRNA:   3'- cgaC-GCUUUa-GCUgUUGUGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 5287 0.66 0.800872
Target:  5'- cGCgGCGuuGUCGGCca---CGGCGUCg -3'
miRNA:   3'- -CGaCGCuuUAGCUGuugugGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 36541 0.66 0.800872
Target:  5'- uCUGCGGugggcguuGAUCGACGagaacgucGCGCuCuGCGCCc -3'
miRNA:   3'- cGACGCU--------UUAGCUGU--------UGUG-GcCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 39613 0.66 0.794901
Target:  5'- gGCcGCGAgcaccuggcccgacgAAUCGACGaagugggcGCACCuGCGCa -3'
miRNA:   3'- -CGaCGCU---------------UUAGCUGU--------UGUGGcCGCGg -5'
26493 5' -52.6 NC_005357.1 + 33898 0.66 0.790885
Target:  5'- cCUGCGAuaccUgGGCAAguuCGCCGGCGaCa -3'
miRNA:   3'- cGACGCUuu--AgCUGUU---GUGGCCGCgG- -5'
26493 5' -52.6 NC_005357.1 + 7537 0.66 0.790885
Target:  5'- -gUGCGc--UCGGCGGCGugcucgaucCgCGGCGCCa -3'
miRNA:   3'- cgACGCuuuAGCUGUUGU---------G-GCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 13765 0.66 0.790885
Target:  5'- cGCUgGCGAGGcCGcCGGCACCGaucuggcacuGCGCg -3'
miRNA:   3'- -CGA-CGCUUUaGCuGUUGUGGC----------CGCGg -5'
26493 5' -52.6 NC_005357.1 + 10684 0.66 0.790885
Target:  5'- aGUUGCGucuuGA-CGGCAGCGCgcaCGGCcucgGCCg -3'
miRNA:   3'- -CGACGCu---UUaGCUGUUGUG---GCCG----CGG- -5'
26493 5' -52.6 NC_005357.1 + 381 0.66 0.790885
Target:  5'- ---aCGAAAUaGACGAUGCCcagGGCGCCc -3'
miRNA:   3'- cgacGCUUUAgCUGUUGUGG---CCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 1463 0.66 0.790885
Target:  5'- --gGCGcgGUCGGCGGCcucCUGGCagGCCg -3'
miRNA:   3'- cgaCGCuuUAGCUGUUGu--GGCCG--CGG- -5'
26493 5' -52.6 NC_005357.1 + 8663 0.66 0.790885
Target:  5'- --cGCGcgGUCGGCAuuGCguGCCGcGCGCa -3'
miRNA:   3'- cgaCGCuuUAGCUGU--UG--UGGC-CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.