miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26493 5' -52.6 NC_005357.1 + 24855 1.15 0.000538
Target:  5'- aGCUGCGAAAUCGACAACACCGGCGCCg -3'
miRNA:   3'- -CGACGCUUUAGCUGUUGUGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 34645 0.8 0.152354
Target:  5'- gGCgGCGAAGg-GugGACGCCGGCGCa -3'
miRNA:   3'- -CGaCGCUUUagCugUUGUGGCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 15081 0.78 0.198106
Target:  5'- uGCUGCGAGGUCGGCccggccuacguggaaAGCAaCGcGCGCCu -3'
miRNA:   3'- -CGACGCUUUAGCUG---------------UUGUgGC-CGCGG- -5'
26493 5' -52.6 NC_005357.1 + 7748 0.78 0.218595
Target:  5'- cCUGCGcAGUCagcgauuGCAGCACCGGCGCg -3'
miRNA:   3'- cGACGCuUUAGc------UGUUGUGGCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 10472 0.78 0.218595
Target:  5'- cCUG-GAAGUCGcGCAGCACCGGC-CCg -3'
miRNA:   3'- cGACgCUUUAGC-UGUUGUGGCCGcGG- -5'
26493 5' -52.6 NC_005357.1 + 25721 0.78 0.218595
Target:  5'- cGCgGCGggGUCGuCGuccuCACCGGCGgCa -3'
miRNA:   3'- -CGaCGCuuUAGCuGUu---GUGGCCGCgG- -5'
26493 5' -52.6 NC_005357.1 + 17769 0.77 0.250026
Target:  5'- cGCgGCGGGcgCGACAACACCauccuGGCccGCCg -3'
miRNA:   3'- -CGaCGCUUuaGCUGUUGUGG-----CCG--CGG- -5'
26493 5' -52.6 NC_005357.1 + 23370 0.76 0.256744
Target:  5'- --gGCGAggacacgcuGAUCGACGcCGCCGGCgGCCg -3'
miRNA:   3'- cgaCGCU---------UUAGCUGUuGUGGCCG-CGG- -5'
26493 5' -52.6 NC_005357.1 + 6599 0.76 0.256744
Target:  5'- gGCUGCGGucuuuGUCGAUGACcaGCgGGCGCg -3'
miRNA:   3'- -CGACGCUu----UAGCUGUUG--UGgCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 31963 0.76 0.263608
Target:  5'- uGCUGCGcGAcuUCcagGGCGACGCCaagGGCGCCa -3'
miRNA:   3'- -CGACGCuUU--AG---CUGUUGUGG---CCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 30358 0.76 0.270621
Target:  5'- --aGCGAAA-CGGCAGgacacCAUCGGCGCCa -3'
miRNA:   3'- cgaCGCUUUaGCUGUU-----GUGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 32005 0.76 0.292559
Target:  5'- -gUGCGAAAcccUCGAC-ACGCUGGaCGCCc -3'
miRNA:   3'- cgACGCUUU---AGCUGuUGUGGCC-GCGG- -5'
26493 5' -52.6 NC_005357.1 + 36011 0.75 0.300174
Target:  5'- cGCgaGCGAGGacgaguUCGACGACAUCaccgagGGCGCCg -3'
miRNA:   3'- -CGa-CGCUUU------AGCUGUUGUGG------CCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 9839 0.75 0.307942
Target:  5'- cGCUGCaccucGGuuUCGGCGucgaugagcgugGCACCGGCGCg -3'
miRNA:   3'- -CGACG-----CUuuAGCUGU------------UGUGGCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 18372 0.75 0.332161
Target:  5'- gGCgGCGAGGUUGGCcuUGCCgauGGCGCCg -3'
miRNA:   3'- -CGaCGCUUUAGCUGuuGUGG---CCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 36842 0.74 0.34054
Target:  5'- --gGCGGAcAUCGACAcgguggcggccaGCGuuGGCGCCg -3'
miRNA:   3'- cgaCGCUU-UAGCUGU------------UGUggCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 34721 0.74 0.34054
Target:  5'- cGCUGCaGuucAUCGGCAA-GCCGGcCGCCg -3'
miRNA:   3'- -CGACG-Cuu-UAGCUGUUgUGGCC-GCGG- -5'
26493 5' -52.6 NC_005357.1 + 9991 0.74 0.34054
Target:  5'- aGCgugGCGggGUCGAaagUGCCGcGCGCCc -3'
miRNA:   3'- -CGa--CGCuuUAGCUguuGUGGC-CGCGG- -5'
26493 5' -52.6 NC_005357.1 + 8398 0.74 0.34054
Target:  5'- gGCUGCGuagccAGUCGGcCAGgGCCGuGCGCUu -3'
miRNA:   3'- -CGACGCu----UUAGCU-GUUgUGGC-CGCGG- -5'
26493 5' -52.6 NC_005357.1 + 13632 0.74 0.343933
Target:  5'- gGCUGCucaAGAUCGGCAaccagggcaagcgcgACGCCGugcGCGCCg -3'
miRNA:   3'- -CGACGc--UUUAGCUGU---------------UGUGGC---CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.