miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26493 5' -52.6 NC_005357.1 + 5287 0.66 0.800872
Target:  5'- cGCgGCGuuGUCGGCca---CGGCGUCg -3'
miRNA:   3'- -CGaCGCuuUAGCUGuugugGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 29001 0.66 0.810672
Target:  5'- cCU-CGuuAUCGACGuagGCgACCaGGCGCCg -3'
miRNA:   3'- cGAcGCuuUAGCUGU---UG-UGG-CCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 40106 0.66 0.810672
Target:  5'- gGCUGCGcGAUCuguGCcuguCGCUGGaCGCCc -3'
miRNA:   3'- -CGACGCuUUAGc--UGuu--GUGGCC-GCGG- -5'
26493 5' -52.6 NC_005357.1 + 39613 0.66 0.794901
Target:  5'- gGCcGCGAgcaccuggcccgacgAAUCGACGaagugggcGCACCuGCGCa -3'
miRNA:   3'- -CGaCGCU---------------UUAGCUGU--------UGUGGcCGCGg -5'
26493 5' -52.6 NC_005357.1 + 39676 0.66 0.810672
Target:  5'- gGCaGUGG--UCGGCAcgcccgagcaGCGCCGG-GCCg -3'
miRNA:   3'- -CGaCGCUuuAGCUGU----------UGUGGCCgCGG- -5'
26493 5' -52.6 NC_005357.1 + 36541 0.66 0.800872
Target:  5'- uCUGCGGugggcguuGAUCGACGagaacgucGCGCuCuGCGCCc -3'
miRNA:   3'- cGACGCU--------UUAGCUGU--------UGUG-GcCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 41153 0.66 0.800872
Target:  5'- --gGuCGAGGgcCGGgAAUACCGGCGCUc -3'
miRNA:   3'- cgaC-GCUUUa-GCUgUUGUGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 27492 0.66 0.780723
Target:  5'- --cGCGAGGaugcCGGCGGCcUCGGcCGCCa -3'
miRNA:   3'- cgaCGCUUUa---GCUGUUGuGGCC-GCGG- -5'
26493 5' -52.6 NC_005357.1 + 8663 0.66 0.790885
Target:  5'- --cGCGcgGUCGGCAuuGCguGCCGcGCGCa -3'
miRNA:   3'- cgaCGCuuUAGCUGU--UG--UGGC-CGCGg -5'
26493 5' -52.6 NC_005357.1 + 1463 0.66 0.790885
Target:  5'- --gGCGcgGUCGGCGGCcucCUGGCagGCCg -3'
miRNA:   3'- cgaCGCuuUAGCUGUUGu--GGCCG--CGG- -5'
26493 5' -52.6 NC_005357.1 + 475 0.66 0.779697
Target:  5'- cGCUGUcgcggucGGAugccUCGGCAGCAUacuGCGCCg -3'
miRNA:   3'- -CGACG-------CUUu---AGCUGUUGUGgc-CGCGG- -5'
26493 5' -52.6 NC_005357.1 + 34669 0.66 0.789876
Target:  5'- gGC-GCGAGccuggauuccuucGUCGccaACAGCaaGCCGGcCGCCg -3'
miRNA:   3'- -CGaCGCUU-------------UAGC---UGUUG--UGGCC-GCGG- -5'
26493 5' -52.6 NC_005357.1 + 10684 0.66 0.790885
Target:  5'- aGUUGCGucuuGA-CGGCAGCGCgcaCGGCcucgGCCg -3'
miRNA:   3'- -CGACGCu---UUaGCUGUUGUG---GCCG----CGG- -5'
26493 5' -52.6 NC_005357.1 + 28505 0.66 0.810672
Target:  5'- aUUGcCGAAcUCGGuCAucuGCCGGCGCUg -3'
miRNA:   3'- cGAC-GCUUuAGCU-GUug-UGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 4250 0.66 0.800872
Target:  5'- --gGCGuAGUCGGugccggccguCAGCGCCGGCauggugaugGCCg -3'
miRNA:   3'- cgaCGCuUUAGCU----------GUUGUGGCCG---------CGG- -5'
26493 5' -52.6 NC_005357.1 + 32640 0.66 0.780723
Target:  5'- cGCUGUccuGUCGAagu--UCGGCGCCg -3'
miRNA:   3'- -CGACGcuuUAGCUguuguGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 7637 0.66 0.810672
Target:  5'- gGC-GCGGc-UCGACccACGCCGGCuccuuGCCg -3'
miRNA:   3'- -CGaCGCUuuAGCUGu-UGUGGCCG-----CGG- -5'
26493 5' -52.6 NC_005357.1 + 13625 0.66 0.800872
Target:  5'- aGCauCGGuagCGGCAGCAaguCCGGCGCg -3'
miRNA:   3'- -CGacGCUuuaGCUGUUGU---GGCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 13854 0.66 0.820273
Target:  5'- cGCUGcCGGuggcCGACgugcgcgccgcgAugGCCGGCgGCCg -3'
miRNA:   3'- -CGAC-GCUuua-GCUG------------UugUGGCCG-CGG- -5'
26493 5' -52.6 NC_005357.1 + 32358 0.66 0.780723
Target:  5'- cGCUGCGG--UCGcCGccgagGCcCCGGcCGCCc -3'
miRNA:   3'- -CGACGCUuuAGCuGU-----UGuGGCC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.