miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 25668 0.67 0.327971
Target:  5'- cACGUCGCCgguggcuaCGCCcacgaGCGUGaCCGCCa -3'
miRNA:   3'- -UGCGGUGGaa------GCGGc----UGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 23378 0.67 0.327971
Target:  5'- cACGCUgAUCgaCGCCGcCGgcGGCCGCUa -3'
miRNA:   3'- -UGCGG-UGGaaGCGGCuGCa-CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 8686 0.67 0.327971
Target:  5'- uGCGCCGCCcaggugugCGCCG-CGcagauuGCUGCCg -3'
miRNA:   3'- -UGCGGUGGaa------GCGGCuGCac----CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 42103 0.67 0.327971
Target:  5'- gACGCCACCgccaGCCuGACGguagGGaCgGUCa -3'
miRNA:   3'- -UGCGGUGGaag-CGG-CUGCa---CC-GgCGG- -5'
26495 5' -61.2 NC_005357.1 + 38337 0.67 0.320262
Target:  5'- aGCGCCGCCcaccUgGCCGGCcugaUGGCUaCCa -3'
miRNA:   3'- -UGCGGUGGa---AgCGGCUGc---ACCGGcGG- -5'
26495 5' -61.2 NC_005357.1 + 17849 0.67 0.312689
Target:  5'- cACGCCGgaCggC-CCGAcCGUGGCCgGCCu -3'
miRNA:   3'- -UGCGGUg-GaaGcGGCU-GCACCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 17850 0.67 0.312689
Target:  5'- cCGCCACCguggccucgUCGCCcAgGUaGGCCaggGCCa -3'
miRNA:   3'- uGCGGUGGa--------AGCGGcUgCA-CCGG---CGG- -5'
26495 5' -61.2 NC_005357.1 + 2356 0.67 0.312689
Target:  5'- uGCGCCGCaaUUCgGCCuGcACGUGGCagaCGCCc -3'
miRNA:   3'- -UGCGGUGg-AAG-CGG-C-UGCACCG---GCGG- -5'
26495 5' -61.2 NC_005357.1 + 816 0.67 0.312689
Target:  5'- cGCGCCcaGCCcUUGCCGAaCGUcGGCCa-- -3'
miRNA:   3'- -UGCGG--UGGaAGCGGCU-GCA-CCGGcgg -5'
26495 5' -61.2 NC_005357.1 + 344 0.67 0.308211
Target:  5'- gUGCCACaCgugcUCGCCGACcauccgggugugcuUGGCCuGCCg -3'
miRNA:   3'- uGCGGUG-Ga---AGCGGCUGc-------------ACCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 18961 0.67 0.305254
Target:  5'- -gGgCACCUguuccaCGCCGGCGUGuaCGCg -3'
miRNA:   3'- ugCgGUGGAa-----GCGGCUGCACcgGCGg -5'
26495 5' -61.2 NC_005357.1 + 14322 0.67 0.305254
Target:  5'- gGCGCgCGCCUUgGCUGAacugcCG-GGCCuGCUg -3'
miRNA:   3'- -UGCG-GUGGAAgCGGCU-----GCaCCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 25622 0.67 0.304517
Target:  5'- uGCGCCGCCUggGCgCGACcaacUGGCaacuggcgaccauCGCCu -3'
miRNA:   3'- -UGCGGUGGAagCG-GCUGc---ACCG-------------GCGG- -5'
26495 5' -61.2 NC_005357.1 + 30995 0.67 0.297954
Target:  5'- cGCGCCuuaucggcgACCUgcaCGCCGGCuc-GCCGCUg -3'
miRNA:   3'- -UGCGG---------UGGAa--GCGGCUGcacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 16577 0.67 0.297954
Target:  5'- aGCGCgACg--CGCCgGACGaGGCCGaCCa -3'
miRNA:   3'- -UGCGgUGgaaGCGG-CUGCaCCGGC-GG- -5'
26495 5' -61.2 NC_005357.1 + 3870 0.67 0.297954
Target:  5'- gGCGCCgucgcuguagGCCg-CGCUGcCGUcGCCGCCg -3'
miRNA:   3'- -UGCGG----------UGGaaGCGGCuGCAcCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 14371 0.67 0.297231
Target:  5'- cCGCUguucgagcagACCgUCGCCGACGUguucuucGGCgaCGCCg -3'
miRNA:   3'- uGCGG----------UGGaAGCGGCUGCA-------CCG--GCGG- -5'
26495 5' -61.2 NC_005357.1 + 34850 0.67 0.29579
Target:  5'- uCGCCGacgaCUUCGUgGACGUGuccaagccgguggcGCCGCg -3'
miRNA:   3'- uGCGGUg---GAAGCGgCUGCAC--------------CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 23872 0.67 0.29079
Target:  5'- aGCGCgGCCUcCaCCGACGUgaucgacuucGGCCagGCCa -3'
miRNA:   3'- -UGCGgUGGAaGcGGCUGCA----------CCGG--CGG- -5'
26495 5' -61.2 NC_005357.1 + 6674 0.67 0.29079
Target:  5'- uGCGCCA----CGCCGAUGUucagGGCCGUg -3'
miRNA:   3'- -UGCGGUggaaGCGGCUGCA----CCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.