miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 7774 0.73 0.130059
Target:  5'- gGCGCgAUCUgCGCCGGCGUccacccuucGCCGCCc -3'
miRNA:   3'- -UGCGgUGGAaGCGGCUGCAc--------CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 8021 0.66 0.360168
Target:  5'- gGCGCCAgCUUCGCCG--GUGaCaGCCu -3'
miRNA:   3'- -UGCGGUgGAAGCGGCugCACcGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 8229 0.66 0.335817
Target:  5'- uGCGCgGCCgugcccUCGUCGGCGaaGUCGCUg -3'
miRNA:   3'- -UGCGgUGGa-----AGCGGCUGCacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 8620 0.66 0.377073
Target:  5'- uGCGCUucucgGCCgcugCGgUGGCGaGGUCGCCg -3'
miRNA:   3'- -UGCGG-----UGGaa--GCgGCUGCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 8686 0.67 0.327971
Target:  5'- uGCGCCGCCcaggugugCGCCG-CGcagauuGCUGCCg -3'
miRNA:   3'- -UGCGGUGGaa------GCGGCuGCac----CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 8965 0.69 0.232327
Target:  5'- gUGCCGCgaUaGCCaGCGUGGCCGUg -3'
miRNA:   3'- uGCGGUGgaAgCGGcUGCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 8988 0.68 0.27687
Target:  5'- nUGCCGgaUUCGCCaGCgGUGGCCGUg -3'
miRNA:   3'- uGCGGUggAAGCGGcUG-CACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 9882 0.66 0.385724
Target:  5'- -aGCgGCa-UCGCCGGCGgcagcauccUGGCCGgCa -3'
miRNA:   3'- ugCGgUGgaAGCGGCUGC---------ACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 10003 0.69 0.2383
Target:  5'- uCGCUGCCgUCGUCuuggcaGACGUGGCgCGCg -3'
miRNA:   3'- uGCGGUGGaAGCGG------CUGCACCG-GCGg -5'
26495 5' -61.2 NC_005357.1 + 10319 0.69 0.2383
Target:  5'- uCGCCAgUUUCGCCaGGcCGUaGCCGUCg -3'
miRNA:   3'- uGCGGUgGAAGCGG-CU-GCAcCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 10996 0.66 0.34784
Target:  5'- cACGCCGCagaucguggcgUCGCCGuugauggggauauaGCGcGGuuGCCa -3'
miRNA:   3'- -UGCGGUGga---------AGCGGC--------------UGCaCCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 11582 0.82 0.027698
Target:  5'- cAUGCCGCCcagggcCGCCGGC-UGGCCGCCg -3'
miRNA:   3'- -UGCGGUGGaa----GCGGCUGcACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 11797 0.66 0.335817
Target:  5'- uGCGCC-CUcauucgCGCCGGC-UGGUCGCa -3'
miRNA:   3'- -UGCGGuGGaa----GCGGCUGcACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 12020 0.68 0.263486
Target:  5'- aGCGCgGCCgUgGCCGGCGaGGUCuuGCCc -3'
miRNA:   3'- -UGCGgUGGaAgCGGCUGCaCCGG--CGG- -5'
26495 5' -61.2 NC_005357.1 + 12270 0.66 0.367709
Target:  5'- gGCGCCaACUgcCGCUGAUGUccgacgcggugcaGGCCGgCg -3'
miRNA:   3'- -UGCGG-UGGaaGCGGCUGCA-------------CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 12321 0.69 0.220759
Target:  5'- gGCGCgGCCUcaUCGCCuggGACaagGGCCGUg -3'
miRNA:   3'- -UGCGgUGGA--AGCGG---CUGca-CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 12672 0.66 0.349466
Target:  5'- cGCGCCuggcagcagccgagGCCgaguUCuaCGGCGUGGCCGa- -3'
miRNA:   3'- -UGCGG--------------UGGa---AGcgGCUGCACCGGCgg -5'
26495 5' -61.2 NC_005357.1 + 12901 0.71 0.174636
Target:  5'- uCGUCGCCUUUGgCGAUGcgcucGGCCGCg -3'
miRNA:   3'- uGCGGUGGAAGCgGCUGCa----CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 13182 0.68 0.270111
Target:  5'- cGCGCUGggcgcCCUUgGCCGGCGuUGuaCGCCu -3'
miRNA:   3'- -UGCGGU-----GGAAgCGGCUGC-ACcgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 13527 0.71 0.161279
Target:  5'- uUGCCGuCCg-CGCCGAacUGUcGGCCGCCu -3'
miRNA:   3'- uGCGGU-GGaaGCGGCU--GCA-CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.