miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 344 0.67 0.308211
Target:  5'- gUGCCACaCgugcUCGCCGACcauccgggugugcuUGGCCuGCCg -3'
miRNA:   3'- uGCGGUG-Ga---AGCGGCUGc-------------ACCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 679 0.77 0.059792
Target:  5'- -gGCCGCCUacggcggCGCCGGcCG-GGCCGCCc -3'
miRNA:   3'- ugCGGUGGAa------GCGGCU-GCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 816 0.67 0.312689
Target:  5'- cGCGCCcaGCCcUUGCCGAaCGUcGGCCa-- -3'
miRNA:   3'- -UGCGG--UGGaAGCGGCU-GCA-CCGGcgg -5'
26495 5' -61.2 NC_005357.1 + 860 0.68 0.270111
Target:  5'- -gGCCuguaugGCUUUCGUuucccuauCGACGagGGCCGCCg -3'
miRNA:   3'- ugCGG------UGGAAGCG--------GCUGCa-CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 989 0.66 0.343798
Target:  5'- -gGCCGCCUggcggUGCCGugGUucaCCGCa -3'
miRNA:   3'- ugCGGUGGAa----GCGGCugCAcc-GGCGg -5'
26495 5' -61.2 NC_005357.1 + 2019 0.74 0.110411
Target:  5'- uACGCCACCagCaCCGGCauaccGGCCGCCu -3'
miRNA:   3'- -UGCGGUGGaaGcGGCUGca---CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 2233 0.66 0.377073
Target:  5'- cGCGCaGCaggCGgCG-CGUGGCCGCg -3'
miRNA:   3'- -UGCGgUGgaaGCgGCuGCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 2356 0.67 0.312689
Target:  5'- uGCGCCGCaaUUCgGCCuGcACGUGGCagaCGCCc -3'
miRNA:   3'- -UGCGGUGg-AAG-CGG-C-UGCACCG---GCGG- -5'
26495 5' -61.2 NC_005357.1 + 3549 0.7 0.187984
Target:  5'- gGCGCCGCCgaauagCGCagcagcgggcugGGCGUacaccgauccgcGGCCGCCa -3'
miRNA:   3'- -UGCGGUGGaa----GCGg-----------CUGCA------------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 3723 0.68 0.263486
Target:  5'- gGCGCCcguGCCguucaCGCCgGugGUGggcacgucgguGCCGCCg -3'
miRNA:   3'- -UGCGG---UGGaa---GCGG-CugCAC-----------CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 3870 0.67 0.297954
Target:  5'- gGCGCCgucgcuguagGCCg-CGCUGcCGUcGCCGCCg -3'
miRNA:   3'- -UGCGG----------UGGaaGCGGCuGCAcCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 4158 0.69 0.223032
Target:  5'- cCGcCCACCUugcgCGCCGugGUcgagguguagccaguGGgCGCCg -3'
miRNA:   3'- uGC-GGUGGAa---GCGGCugCA---------------CCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 4182 0.66 0.335026
Target:  5'- -gGCCGCC-UCGauGGCGggcauguUGGCCGCg -3'
miRNA:   3'- ugCGGUGGaAGCggCUGC-------ACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 4799 0.66 0.335026
Target:  5'- cACGCCGgCUggcgCugcgggauugcugGCCGGCGacaGGUCGCCg -3'
miRNA:   3'- -UGCGGUgGAa---G-------------CGGCUGCa--CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 5345 0.71 0.157035
Target:  5'- cAUGgCAUCg-CGCUG-CGUGGCCGCCu -3'
miRNA:   3'- -UGCgGUGGaaGCGGCuGCACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 5559 0.72 0.148849
Target:  5'- cCGCCACgguaucgaCggCGCCaACGcUGGCCGCCa -3'
miRNA:   3'- uGCGGUG--------GaaGCGGcUGC-ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 6630 0.66 0.360168
Target:  5'- cCGCCAgCUUCGCgCG-CuUGGCCGg- -3'
miRNA:   3'- uGCGGUgGAAGCG-GCuGcACCGGCgg -5'
26495 5' -61.2 NC_005357.1 + 6674 0.67 0.29079
Target:  5'- uGCGCCA----CGCCGAUGUucagGGCCGUg -3'
miRNA:   3'- -UGCGGUggaaGCGGCUGCA----CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 7235 0.8 0.037954
Target:  5'- cGCGCuCACCcUCGgCGAUGUcGGCCGCCc -3'
miRNA:   3'- -UGCG-GUGGaAGCgGCUGCA-CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 7619 0.66 0.360168
Target:  5'- -gGUCGCgCagCGCCGgacACGUGGCCuugGCCu -3'
miRNA:   3'- ugCGGUG-GaaGCGGC---UGCACCGG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.