miRNA display CGI


Results 1 - 20 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 24021 1.11 0.000149
Target:  5'- aACGCCACCUUCGCCGACGUGGCCGCCa -3'
miRNA:   3'- -UGCGGUGGAAGCGGCUGCACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 33102 0.89 0.006919
Target:  5'- cCGCCGCCcgccgCGCCGACGUGcGCCGCCa -3'
miRNA:   3'- uGCGGUGGaa---GCGGCUGCAC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 11582 0.82 0.027698
Target:  5'- cAUGCCGCCcagggcCGCCGGC-UGGCCGCCg -3'
miRNA:   3'- -UGCGGUGGaa----GCGGCUGcACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 7235 0.8 0.037954
Target:  5'- cGCGCuCACCcUCGgCGAUGUcGGCCGCCc -3'
miRNA:   3'- -UGCG-GUGGaAGCgGCUGCA-CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18405 0.79 0.042541
Target:  5'- cGCGUCGCCUUCGCUGAauUGGCCGaCg -3'
miRNA:   3'- -UGCGGUGGAAGCGGCUgcACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 19069 0.78 0.050454
Target:  5'- cACGCCACCguguucaUCGgCGGCGaGGCCGUCg -3'
miRNA:   3'- -UGCGGUGGa------AGCgGCUGCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 679 0.77 0.059792
Target:  5'- -gGCCGCCUacggcggCGCCGGcCG-GGCCGCCc -3'
miRNA:   3'- ugCGGUGGAa------GCGGCU-GCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 13852 0.76 0.066926
Target:  5'- cACGCUGCCggUgGCCGACGUGcgcGCCGCg -3'
miRNA:   3'- -UGCGGUGGa-AgCGGCUGCAC---CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 14823 0.76 0.070793
Target:  5'- gGCGCUGCCUUCGCCcaggucGAUGccguUGGCgGCCa -3'
miRNA:   3'- -UGCGGUGGAAGCGG------CUGC----ACCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 19316 0.76 0.070793
Target:  5'- cCGUUACCgcugUCGCCGugG-GcGCCGCCg -3'
miRNA:   3'- uGCGGUGGa---AGCGGCugCaC-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 16809 0.76 0.077
Target:  5'- cGCGCUGCUggcgaccgCGCCGcCGUGGuuGCCa -3'
miRNA:   3'- -UGCGGUGGaa------GCGGCuGCACCggCGG- -5'
26495 5' -61.2 NC_005357.1 + 13756 0.75 0.088518
Target:  5'- gGCG-CGCCg-CGCUGGCGaGGCCGCCg -3'
miRNA:   3'- -UGCgGUGGaaGCGGCUGCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 14206 0.75 0.091011
Target:  5'- gAC-CCGCgCguggUCGUCGGCGUGGCCGaCCu -3'
miRNA:   3'- -UGcGGUG-Ga---AGCGGCUGCACCGGC-GG- -5'
26495 5' -61.2 NC_005357.1 + 29119 0.74 0.101662
Target:  5'- uACGCCGCCUacaaCGCCGGCcccGGCgCGCUg -3'
miRNA:   3'- -UGCGGUGGAa---GCGGCUGca-CCG-GCGG- -5'
26495 5' -61.2 NC_005357.1 + 33203 0.74 0.101662
Target:  5'- cUGCCGCCgggcgCGCCGcagaACGUGcGCCGCg -3'
miRNA:   3'- uGCGGUGGaa---GCGGC----UGCAC-CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 27670 0.74 0.104503
Target:  5'- gGCGCCACCUcCaCCGugGUcuuggaauacaGGCCGCg -3'
miRNA:   3'- -UGCGGUGGAaGcGGCugCA-----------CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 2019 0.74 0.110411
Target:  5'- uACGCCACCagCaCCGGCauaccGGCCGCCu -3'
miRNA:   3'- -UGCGGUGGaaGcGGCUGca---CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32345 0.73 0.11663
Target:  5'- cCGCCGCCcaggUCGCUG-CGgucGCCGCCg -3'
miRNA:   3'- uGCGGUGGa---AGCGGCuGCac-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 34426 0.73 0.119861
Target:  5'- gGCGCCAagggcacguCCgaCGCCGugGUGcuGCUGCCu -3'
miRNA:   3'- -UGCGGU---------GGaaGCGGCugCAC--CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 23764 0.73 0.123175
Target:  5'- gGCGCCACCgg-GCCGAUGc-GCCGCg -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGCacCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.