miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 23358 0.66 0.360168
Target:  5'- uCGCCGCCgaugaacaCGgUGGCGUGcCCGCUg -3'
miRNA:   3'- uGCGGUGGaa------GCgGCUGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 4799 0.66 0.335026
Target:  5'- cACGCCGgCUggcgCugcgggauugcugGCCGGCGacaGGUCGCCg -3'
miRNA:   3'- -UGCGGUgGAa---G-------------CGGCUGCa--CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18573 0.66 0.385724
Target:  5'- -gGCCGCgCUcgCGgUGACGgccUGGCCGUCc -3'
miRNA:   3'- ugCGGUG-GAa-GCgGCUGC---ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 19069 0.66 0.343798
Target:  5'- aGCGUguCCU-CGCCGAgGUcacgcgauugcaGGCCgGCCu -3'
miRNA:   3'- -UGCGguGGAaGCGGCUgCA------------CCGG-CGG- -5'
26495 5' -61.2 NC_005357.1 + 41601 0.66 0.385724
Target:  5'- uGC-CCACCUg-GCCGACGUucGGCaaggGCUg -3'
miRNA:   3'- -UGcGGUGGAagCGGCUGCA--CCGg---CGG- -5'
26495 5' -61.2 NC_005357.1 + 32303 0.66 0.343798
Target:  5'- uGCGCgACCUcaUCGCCGcCaucaaGGCCGgCg -3'
miRNA:   3'- -UGCGgUGGA--AGCGGCuGca---CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 31294 0.66 0.360168
Target:  5'- aGCGaaGCCUggCGaCCG-CGUGGUgGCCc -3'
miRNA:   3'- -UGCggUGGAa-GC-GGCuGCACCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 25762 0.66 0.368554
Target:  5'- cGCGCUGCUgggCGgCGGCaacgaUGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaa-GCgGCUGc----ACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 6630 0.66 0.360168
Target:  5'- cCGCCAgCUUCGCgCG-CuUGGCCGg- -3'
miRNA:   3'- uGCGGUgGAAGCG-GCuGcACCGGCgg -5'
26495 5' -61.2 NC_005357.1 + 18084 0.66 0.343798
Target:  5'- -gGCCGCCgaaGCCGGCGcgaaccaGGaCGCCu -3'
miRNA:   3'- ugCGGUGGaagCGGCUGCa------CCgGCGG- -5'
26495 5' -61.2 NC_005357.1 + 8229 0.66 0.335817
Target:  5'- uGCGCgGCCgugcccUCGUCGGCGaaGUCGCUg -3'
miRNA:   3'- -UGCGgUGGa-----AGCGGCUGCacCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 989 0.66 0.343798
Target:  5'- -gGCCGCCUggcggUGCCGugGUucaCCGCa -3'
miRNA:   3'- ugCGGUGGAa----GCGGCugCAcc-GGCGg -5'
26495 5' -61.2 NC_005357.1 + 26245 0.66 0.374503
Target:  5'- cGCGUCGCCgaaggcacgggcaccCGCCGGCcUGGUCGgCu -3'
miRNA:   3'- -UGCGGUGGaa-------------GCGGCUGcACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 34691 0.66 0.385724
Target:  5'- uCGCCaacagcaaGCCggcCGCCGAgCGUGcGCUGCa -3'
miRNA:   3'- uGCGG--------UGGaa-GCGGCU-GCAC-CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 4182 0.66 0.335026
Target:  5'- -gGCCGCC-UCGauGGCGggcauguUGGCCGCg -3'
miRNA:   3'- ugCGGUGGaAGCggCUGC-------ACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 16195 0.66 0.385724
Target:  5'- gACGCCACgcgccaUUCGCCcgaaGACGUGaGCaGCa -3'
miRNA:   3'- -UGCGGUGg-----AAGCGG----CUGCAC-CGgCGg -5'
26495 5' -61.2 NC_005357.1 + 37321 0.66 0.335817
Target:  5'- gGCGCCAgCCgcaccggaCGCUGGgccGGCCGCCu -3'
miRNA:   3'- -UGCGGU-GGaa------GCGGCUgcaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 2233 0.66 0.377073
Target:  5'- cGCGCaGCaggCGgCG-CGUGGCCGCg -3'
miRNA:   3'- -UGCGgUGgaaGCgGCuGCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 21132 0.66 0.385724
Target:  5'- gACGCUGCCcagcUUgGCCGcCGUGuCCGCg -3'
miRNA:   3'- -UGCGGUGG----AAgCGGCuGCACcGGCGg -5'
26495 5' -61.2 NC_005357.1 + 17416 0.66 0.377073
Target:  5'- aGCGgCGCCcacgUCGCCcuuGAgcaGUGGCCccGCCa -3'
miRNA:   3'- -UGCgGUGGa---AGCGG---CUg--CACCGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.