miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 12901 0.71 0.174636
Target:  5'- uCGUCGCCUUUGgCGAUGcgcucGGCCGCg -3'
miRNA:   3'- uGCGGUGGAAGCgGCUGCa----CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 5559 0.72 0.148849
Target:  5'- cCGCCACgguaucgaCggCGCCaACGcUGGCCGCCa -3'
miRNA:   3'- uGCGGUG--------GaaGCGGcUGC-ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 16038 0.72 0.151669
Target:  5'- -gGCCugCcaguuguaggccagUUCGCgcACGUGGCCGCCg -3'
miRNA:   3'- ugCGGugG--------------AAGCGgcUGCACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18751 0.71 0.156616
Target:  5'- cGCGaCCACCUuuUUGCCGGCGauuucuuccaucgUcagcgucgaGGCCGCCa -3'
miRNA:   3'- -UGC-GGUGGA--AGCGGCUGC-------------A---------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 19186 0.71 0.157035
Target:  5'- gUGCCGCCggCGUCGAUGauguucUGGCCGUUc -3'
miRNA:   3'- uGCGGUGGaaGCGGCUGC------ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 38726 0.71 0.15872
Target:  5'- uGCGCCGCauggggcagcgcgUCGCCGugGUGGauuCGCa -3'
miRNA:   3'- -UGCGGUGga-----------AGCGGCugCACCg--GCGg -5'
26495 5' -61.2 NC_005357.1 + 13527 0.71 0.161279
Target:  5'- uUGCCGuCCg-CGCCGAacUGUcGGCCGCCu -3'
miRNA:   3'- uGCGGU-GGaaGCGGCU--GCA-CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 19266 0.71 0.165186
Target:  5'- gGCGUCgauGCUggaaUCGCCGuagaacaGCGUGGUCGCCu -3'
miRNA:   3'- -UGCGG---UGGa---AGCGGC-------UGCACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 28872 0.71 0.174176
Target:  5'- cGCGCCACgUccUCGCUgcuGGCGUaguugcuGGCCGUCg -3'
miRNA:   3'- -UGCGGUGgA--AGCGG---CUGCA-------CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 18354 0.72 0.144514
Target:  5'- gAUGaCCACCUguUUGCCGGCGgcgagguUGGCCuuGCCg -3'
miRNA:   3'- -UGC-GGUGGA--AGCGGCUGC-------ACCGG--CGG- -5'
26495 5' -61.2 NC_005357.1 + 39587 0.72 0.133633
Target:  5'- uCGCUgguGCUggCGCCGcugcGCGUGGCCGCg -3'
miRNA:   3'- uGCGG---UGGaaGCGGC----UGCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 34230 0.73 0.130059
Target:  5'- -gGCCGCCaugUCGCUGACGaacgGGCaggaCGCCa -3'
miRNA:   3'- ugCGGUGGa--AGCGGCUGCa---CCG----GCGG- -5'
26495 5' -61.2 NC_005357.1 + 7235 0.8 0.037954
Target:  5'- cGCGCuCACCcUCGgCGAUGUcGGCCGCCc -3'
miRNA:   3'- -UGCG-GUGGaAGCgGCUGCA-CCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 679 0.77 0.059792
Target:  5'- -gGCCGCCUacggcggCGCCGGcCG-GGCCGCCc -3'
miRNA:   3'- ugCGGUGGAa------GCGGCU-GCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 14823 0.76 0.070793
Target:  5'- gGCGCUGCCUUCGCCcaggucGAUGccguUGGCgGCCa -3'
miRNA:   3'- -UGCGGUGGAAGCGG------CUGC----ACCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 27670 0.74 0.104503
Target:  5'- gGCGCCACCUcCaCCGugGUcuuggaauacaGGCCGCg -3'
miRNA:   3'- -UGCGGUGGAaGcGGCugCA-----------CCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 32345 0.73 0.11663
Target:  5'- cCGCCGCCcaggUCGCUG-CGgucGCCGCCg -3'
miRNA:   3'- uGCGGUGGa---AGCGGCuGCac-CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 34426 0.73 0.119861
Target:  5'- gGCGCCAagggcacguCCgaCGCCGugGUGcuGCUGCCu -3'
miRNA:   3'- -UGCGGU---------GGaaGCGGCugCAC--CGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 23764 0.73 0.123175
Target:  5'- gGCGCCACCgg-GCCGAUGc-GCCGCg -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGCacCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 7774 0.73 0.130059
Target:  5'- gGCGCgAUCUgCGCCGGCGUccacccuucGCCGCCc -3'
miRNA:   3'- -UGCGgUGGAaGCGGCUGCAc--------CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.