miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26498 3' -57.9 NC_005357.1 + 23359 0.67 0.412737
Target:  5'- --cGCguGACCUcGGCGAggaCACGCUGa -3'
miRNA:   3'- acuUGguCUGGGuCCGCUg--GUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 25917 0.67 0.412737
Target:  5'- -cGGCCAGACCaccGGC-ACCuCGCUGg -3'
miRNA:   3'- acUUGGUCUGGgu-CCGcUGGuGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 5133 0.67 0.422212
Target:  5'- uUGAACUgcaacGugCCgcgcAGGCGGCCGuCGCUGc -3'
miRNA:   3'- -ACUUGGu----CugGG----UCCGCUGGU-GCGAC- -5'
26498 3' -57.9 NC_005357.1 + 8261 0.67 0.43085
Target:  5'- gGAAUCA--UCCGGGCauucggcuuccagGGCCACGCUGc -3'
miRNA:   3'- aCUUGGUcuGGGUCCG-------------CUGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 8685 0.67 0.451401
Target:  5'- cUGcGCC--GCCCAGGUGugcGCCGCGCa- -3'
miRNA:   3'- -ACuUGGucUGGGUCCGC---UGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 23631 0.66 0.460372
Target:  5'- --cGCCAGAUcaCCAacaagguGGCGGCCucgACGCUGa -3'
miRNA:   3'- acuUGGUCUG--GGU-------CCGCUGG---UGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 8521 0.66 0.461374
Target:  5'- gUGGGCCGuGGCgUAGGCGAUgaaACGCUc -3'
miRNA:   3'- -ACUUGGU-CUGgGUCCGCUGg--UGCGAc -5'
26498 3' -57.9 NC_005357.1 + 2569 0.66 0.471462
Target:  5'- -cGACaCGG-CCCAGcGCGugCGCGCg- -3'
miRNA:   3'- acUUG-GUCuGGGUC-CGCugGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 30401 0.68 0.394188
Target:  5'- cUGGGCaAGACCUcgccGGCcacGGCCGCGCUGc -3'
miRNA:   3'- -ACUUGgUCUGGGu---CCG---CUGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 17757 0.68 0.394188
Target:  5'- gUGGACguGGCCCGcGGCGGgCGCGaCa- -3'
miRNA:   3'- -ACUUGguCUGGGU-CCGCUgGUGC-Gac -5'
26498 3' -57.9 NC_005357.1 + 39240 0.68 0.393275
Target:  5'- gUGAGCaagcuguacgcagCGGACgCCGGGCuuGCCAUGCUGc -3'
miRNA:   3'- -ACUUG-------------GUCUG-GGUCCGc-UGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 41438 0.74 0.147585
Target:  5'- gUGAACCAcGGCaccggCCAGGCGGCCAagugGCUGc -3'
miRNA:   3'- -ACUUGGU-CUG-----GGUCCGCUGGUg---CGAC- -5'
26498 3' -57.9 NC_005357.1 + 10847 0.73 0.178919
Target:  5'- aGAAgCAGGCCCAGGCGAgCA-GCc- -3'
miRNA:   3'- aCUUgGUCUGGGUCCGCUgGUgCGac -5'
26498 3' -57.9 NC_005357.1 + 26147 0.72 0.194073
Target:  5'- -cGACCGGGuagccuUCCGGGUGGCCGCGCg- -3'
miRNA:   3'- acUUGGUCU------GGGUCCGCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 21279 0.7 0.266281
Target:  5'- uUGAACCAGGgCgCGgacacGGCGGCCAaGCUGg -3'
miRNA:   3'- -ACUUGGUCUgG-GU-----CCGCUGGUgCGAC- -5'
26498 3' -57.9 NC_005357.1 + 19625 0.69 0.3256
Target:  5'- cGGGCCAG-UCC-GGC-ACCAUGCUGa -3'
miRNA:   3'- aCUUGGUCuGGGuCCGcUGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 2821 0.69 0.333669
Target:  5'- cGGGCCAGGUgCucGCGGCCACGCg- -3'
miRNA:   3'- aCUUGGUCUGgGucCGCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 20648 0.69 0.341056
Target:  5'- aGAACCAggacaucagcaccGugCCGGGCGGCCuguccuauguggACGCg- -3'
miRNA:   3'- aCUUGGU-------------CugGGUCCGCUGG------------UGCGac -5'
26498 3' -57.9 NC_005357.1 + 17340 0.68 0.358749
Target:  5'- ---cCCAcGGCgCCGGGCGcGCUGCGCUGg -3'
miRNA:   3'- acuuGGU-CUG-GGUCCGC-UGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 2659 0.68 0.367396
Target:  5'- aGGGCCAGcggucGCCCAGGUGuucgaucaGCCACGg-- -3'
miRNA:   3'- aCUUGGUC-----UGGGUCCGC--------UGGUGCgac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.