Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26498 | 3' | -57.9 | NC_005357.1 | + | 37069 | 0.74 | 0.160351 |
Target: 5'- cUGGGCgCGGugC-AGGCGGCCACGCa- -3' miRNA: 3'- -ACUUG-GUCugGgUCCGCUGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 29010 | 0.66 | 0.491965 |
Target: 5'- cGAcgUAGGCgaCCAGGCG-CCGCGCUu -3' miRNA: 3'- aCUugGUCUG--GGUCCGCuGGUGCGAc -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 29455 | 0.66 | 0.471462 |
Target: 5'- gUGcuCCuGGCaCCAGGCGACgaaGCGCg- -3' miRNA: 3'- -ACuuGGuCUG-GGUCCGCUGg--UGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 37330 | 0.66 | 0.461374 |
Target: 5'- cGcACCGGACgCUGGGcCGGCCGC-CUGu -3' miRNA: 3'- aCuUGGUCUG-GGUCC-GCUGGUGcGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 28241 | 0.66 | 0.461374 |
Target: 5'- cGggUCGGACugcgCCAGGCucACCAUGUUGc -3' miRNA: 3'- aCuuGGUCUG----GGUCCGc-UGGUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 17104 | 0.66 | 0.461374 |
Target: 5'- -cGGCCGGGCCUugGGGCuuGACCACGa-- -3' miRNA: 3'- acUUGGUCUGGG--UCCG--CUGGUGCgac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 3862 | 0.66 | 0.461374 |
Target: 5'- uUGuACCAGGCgCCGucgcuGuaGGCCGCGCUGc -3' miRNA: 3'- -ACuUGGUCUG-GGU-----CcgCUGGUGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 27430 | 0.67 | 0.422212 |
Target: 5'- cGcACCGcGCCC-GGCGGCCgcaggcccugGCGCUGg -3' miRNA: 3'- aCuUGGUcUGGGuCCGCUGG----------UGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 23521 | 0.67 | 0.412737 |
Target: 5'- cGAGCgCGccuUCCAGGCGGCgCACGCg- -3' miRNA: 3'- aCUUG-GUcu-GGGUCCGCUG-GUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 24272 | 0.67 | 0.403395 |
Target: 5'- uUGAGCguGGCgCCGGacaGUGACCACGUg- -3' miRNA: 3'- -ACUUGguCUG-GGUC---CGCUGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 23726 | 0.67 | 0.403395 |
Target: 5'- cGGGCCAGugCCucgguGGCGcgcagcagcGCCAUGCc- -3' miRNA: 3'- aCUUGGUCugGGu----CCGC---------UGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 39574 | 0.71 | 0.245121 |
Target: 5'- cGAACCAGGCCCcucgcuggugcuGGCGccGCUGCGCg- -3' miRNA: 3'- aCUUGGUCUGGGu-----------CCGC--UGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 8533 | 0.7 | 0.29478 |
Target: 5'- cGAACUu-GCCCAGGUaucgcaGGCCGCGCUc -3' miRNA: 3'- aCUUGGucUGGGUCCG------CUGGUGCGAc -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 16792 | 0.68 | 0.362191 |
Target: 5'- aUGGucGCCAGuugccaguuggucgcGCCCAGGCGGCgcaguuCACGCg- -3' miRNA: 3'- -ACU--UGGUC---------------UGGGUCCGCUG------GUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 38024 | 0.68 | 0.367396 |
Target: 5'- cGAcuGCCgcacgcucaAGGCCCGGcGCGACgGCGcCUGg -3' miRNA: 3'- aCU--UGG---------UCUGGGUC-CGCUGgUGC-GAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 40667 | 0.68 | 0.376187 |
Target: 5'- cGAcgcGCCAGGCgCAGGCcGGCCAUGa-- -3' miRNA: 3'- aCU---UGGUCUGgGUCCG-CUGGUGCgac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 16581 | 0.68 | 0.376187 |
Target: 5'- cGAcgcGCCGGA-CgAGGcCGACCACGCg- -3' miRNA: 3'- aCU---UGGUCUgGgUCC-GCUGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 2001 | 0.68 | 0.385118 |
Target: 5'- cUGAuCUugAGGCCCAGGCG-CU-CGCUGg -3' miRNA: 3'- -ACUuGG--UCUGGGUCCGCuGGuGCGAC- -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 16800 | 0.66 | 0.50237 |
Target: 5'- cGAGgUGGACgCGcugcuGGCGACCGCGCc- -3' miRNA: 3'- aCUUgGUCUGgGU-----CCGCUGGUGCGac -5' |
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26498 | 3' | -57.9 | NC_005357.1 | + | 41438 | 0.74 | 0.147585 |
Target: 5'- gUGAACCAcGGCaccggCCAGGCGGCCAagugGCUGc -3' miRNA: 3'- -ACUUGGU-CUG-----GGUCCGCUGGUg---CGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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