miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26498 3' -57.9 NC_005357.1 + 23133 1.08 0.000451
Target:  5'- aUGAACCAGACCCAGGCGACCACGCUGu -3'
miRNA:   3'- -ACUUGGUCUGGGUCCGCUGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 41438 0.74 0.147585
Target:  5'- gUGAACCAcGGCaccggCCAGGCGGCCAagugGCUGc -3'
miRNA:   3'- -ACUUGGU-CUG-----GGUCCGCUGGUg---CGAC- -5'
26498 3' -57.9 NC_005357.1 + 37069 0.74 0.160351
Target:  5'- cUGGGCgCGGugC-AGGCGGCCACGCa- -3'
miRNA:   3'- -ACUUG-GUCugGgUCCGCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 10847 0.73 0.178919
Target:  5'- aGAAgCAGGCCCAGGCGAgCA-GCc- -3'
miRNA:   3'- aCUUgGUCUGGGUCCGCUgGUgCGac -5'
26498 3' -57.9 NC_005357.1 + 26147 0.72 0.194073
Target:  5'- -cGACCGGGuagccuUCCGGGUGGCCGCGCg- -3'
miRNA:   3'- acUUGGUCU------GGGUCCGCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 39574 0.71 0.245121
Target:  5'- cGAACCAGGCCCcucgcuggugcuGGCGccGCUGCGCg- -3'
miRNA:   3'- aCUUGGUCUGGGu-----------CCGC--UGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 21279 0.7 0.266281
Target:  5'- uUGAACCAGGgCgCGgacacGGCGGCCAaGCUGg -3'
miRNA:   3'- -ACUUGGUCUgG-GU-----CCGCUGGUgCGAC- -5'
26498 3' -57.9 NC_005357.1 + 8533 0.7 0.29478
Target:  5'- cGAACUu-GCCCAGGUaucgcaGGCCGCGCUc -3'
miRNA:   3'- aCUUGGucUGGGUCCG------CUGGUGCGAc -5'
26498 3' -57.9 NC_005357.1 + 19625 0.69 0.3256
Target:  5'- cGGGCCAG-UCC-GGC-ACCAUGCUGa -3'
miRNA:   3'- aCUUGGUCuGGGuCCGcUGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 2821 0.69 0.333669
Target:  5'- cGGGCCAGGUgCucGCGGCCACGCg- -3'
miRNA:   3'- aCUUGGUCUGgGucCGCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 20648 0.69 0.341056
Target:  5'- aGAACCAggacaucagcaccGugCCGGGCGGCCuguccuauguggACGCg- -3'
miRNA:   3'- aCUUGGU-------------CugGGUCCGCUGG------------UGCGac -5'
26498 3' -57.9 NC_005357.1 + 17340 0.68 0.358749
Target:  5'- ---cCCAcGGCgCCGGGCGcGCUGCGCUGg -3'
miRNA:   3'- acuuGGU-CUG-GGUCCGC-UGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 16792 0.68 0.362191
Target:  5'- aUGGucGCCAGuugccaguuggucgcGCCCAGGCGGCgcaguuCACGCg- -3'
miRNA:   3'- -ACU--UGGUC---------------UGGGUCCGCUG------GUGCGac -5'
26498 3' -57.9 NC_005357.1 + 38024 0.68 0.367396
Target:  5'- cGAcuGCCgcacgcucaAGGCCCGGcGCGACgGCGcCUGg -3'
miRNA:   3'- aCU--UGG---------UCUGGGUC-CGCUGgUGC-GAC- -5'
26498 3' -57.9 NC_005357.1 + 2659 0.68 0.367396
Target:  5'- aGGGCCAGcggucGCCCAGGUGuucgaucaGCCACGg-- -3'
miRNA:   3'- aCUUGGUC-----UGGGUCCGC--------UGGUGCgac -5'
26498 3' -57.9 NC_005357.1 + 16581 0.68 0.376187
Target:  5'- cGAcgcGCCGGA-CgAGGcCGACCACGCg- -3'
miRNA:   3'- aCU---UGGUCUgGgUCC-GCUGGUGCGac -5'
26498 3' -57.9 NC_005357.1 + 40667 0.68 0.376187
Target:  5'- cGAcgcGCCAGGCgCAGGCcGGCCAUGa-- -3'
miRNA:   3'- aCU---UGGUCUGgGUCCG-CUGGUGCgac -5'
26498 3' -57.9 NC_005357.1 + 2001 0.68 0.385118
Target:  5'- cUGAuCUugAGGCCCAGGCG-CU-CGCUGg -3'
miRNA:   3'- -ACUuGG--UCUGGGUCCGCuGGuGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 39240 0.68 0.393275
Target:  5'- gUGAGCaagcuguacgcagCGGACgCCGGGCuuGCCAUGCUGc -3'
miRNA:   3'- -ACUUG-------------GUCUG-GGUCCGc-UGGUGCGAC- -5'
26498 3' -57.9 NC_005357.1 + 17757 0.68 0.394188
Target:  5'- gUGGACguGGCCCGcGGCGGgCGCGaCa- -3'
miRNA:   3'- -ACUUGguCUGGGU-CCGCUgGUGC-Gac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.