miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26499 3' -46 NC_005357.1 + 1718 0.69 0.95831
Target:  5'- cGGCGu-GCCGGCGAgggcguccaAGUCCUCG-CGg -3'
miRNA:   3'- cUUGCuuUGGUUGCU---------UUAGGAGCuGC- -5'
26499 3' -46 NC_005357.1 + 3392 0.66 0.990701
Target:  5'- cGAugGGuuCCAuCGGuugCCUUGGCGg -3'
miRNA:   3'- -CUugCUuuGGUuGCUuuaGGAGCUGC- -5'
26499 3' -46 NC_005357.1 + 4742 0.67 0.981105
Target:  5'- -cGCGAuguucucGGCCAcggccGCGAuGUUCUCGGCGu -3'
miRNA:   3'- cuUGCU-------UUGGU-----UGCUuUAGGAGCUGC- -5'
26499 3' -46 NC_005357.1 + 7349 0.66 0.989214
Target:  5'- uGAGCGcgGCCu-CGA---CCUCGGCGu -3'
miRNA:   3'- -CUUGCuuUGGuuGCUuuaGGAGCUGC- -5'
26499 3' -46 NC_005357.1 + 7563 0.68 0.975207
Target:  5'- cGGCGccACCGgcuuggacacguccACGAAGUCgUCGGCGa -3'
miRNA:   3'- cUUGCuuUGGU--------------UGCUUUAGgAGCUGC- -5'
26499 3' -46 NC_005357.1 + 9598 0.66 0.989056
Target:  5'- aGGCGAAGCCGuuGCGGcugguguAGUCCgacCGGCa -3'
miRNA:   3'- cUUGCUUUGGU--UGCU-------UUAGGa--GCUGc -5'
26499 3' -46 NC_005357.1 + 9728 0.67 0.987548
Target:  5'- --uCGAAGCCGcggGCGAAcUgCUCGugGu -3'
miRNA:   3'- cuuGCUUUGGU---UGCUUuAgGAGCugC- -5'
26499 3' -46 NC_005357.1 + 12255 0.73 0.840725
Target:  5'- cGAACG-GAUCGGCGGuaguGUCCUgGGCGg -3'
miRNA:   3'- -CUUGCuUUGGUUGCUu---UAGGAgCUGC- -5'
26499 3' -46 NC_005357.1 + 13507 0.66 0.992022
Target:  5'- cGGCGAGGCCcuggcuuuguggGACGAGugGUCggCGACGg -3'
miRNA:   3'- cUUGCUUUGG------------UUGCUU--UAGgaGCUGC- -5'
26499 3' -46 NC_005357.1 + 13695 0.68 0.969805
Target:  5'- uGGACGAuGCCAagGCGcucAUCCUCG-CGu -3'
miRNA:   3'- -CUUGCUuUGGU--UGCuu-UAGGAGCuGC- -5'
26499 3' -46 NC_005357.1 + 14384 0.7 0.938774
Target:  5'- aGAcCGucGCCGACGuguUCUUCGGCGa -3'
miRNA:   3'- -CUuGCuuUGGUUGCuuuAGGAGCUGC- -5'
26499 3' -46 NC_005357.1 + 14939 0.68 0.973075
Target:  5'- --cCGAGGCCGcCGgcAUCCUCG-CGu -3'
miRNA:   3'- cuuGCUUUGGUuGCuuUAGGAGCuGC- -5'
26499 3' -46 NC_005357.1 + 17083 0.82 0.359121
Target:  5'- aGGCGAAGCCGGCGcgGUUCUCGGCc -3'
miRNA:   3'- cUUGCUUUGGUUGCuuUAGGAGCUGc -5'
26499 3' -46 NC_005357.1 + 18062 0.72 0.867824
Target:  5'- uGGCGAAugC-GCGAAGcCCUCGACc -3'
miRNA:   3'- cUUGCUUugGuUGCUUUaGGAGCUGc -5'
26499 3' -46 NC_005357.1 + 18527 0.66 0.994217
Target:  5'- cAugGAAGCCGcggGCGuggcgcacuUCCUUGGCGu -3'
miRNA:   3'- cUugCUUUGGU---UGCuuu------AGGAGCUGC- -5'
26499 3' -46 NC_005357.1 + 19055 0.67 0.985689
Target:  5'- cGGCGGcgucGAUCAGCGu-GUCCUCGcCGa -3'
miRNA:   3'- cUUGCU----UUGGUUGCuuUAGGAGCuGC- -5'
26499 3' -46 NC_005357.1 + 19849 0.67 0.988237
Target:  5'- aGAuCGcAACCGcgGCGAGAagcggcacaacaacaUCCUCGACa -3'
miRNA:   3'- -CUuGCuUUGGU--UGCUUU---------------AGGAGCUGc -5'
26499 3' -46 NC_005357.1 + 20910 0.89 0.142382
Target:  5'- uGAACGGAugCAcaACGAAAUCCUCGACc -3'
miRNA:   3'- -CUUGCUUugGU--UGCUUUAGGAGCUGc -5'
26499 3' -46 NC_005357.1 + 21976 0.69 0.95389
Target:  5'- cGAAgGGAACCGgaACGAGggCCUgCGGCu -3'
miRNA:   3'- -CUUgCUUUGGU--UGCUUuaGGA-GCUGc -5'
26499 3' -46 NC_005357.1 + 22865 1.11 0.0063
Target:  5'- uGAACGAAACCAACGAAAUCCUCGACGa -3'
miRNA:   3'- -CUUGCUUUGGUUGCUUUAGGAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.