Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26499 | 3' | -46 | NC_005357.1 | + | 17083 | 0.82 | 0.359121 |
Target: 5'- aGGCGAAGCCGGCGcgGUUCUCGGCc -3' miRNA: 3'- cUUGCUUUGGUUGCuuUAGGAGCUGc -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 4742 | 0.67 | 0.981105 |
Target: 5'- -cGCGAuguucucGGCCAcggccGCGAuGUUCUCGGCGu -3' miRNA: 3'- cuUGCU-------UUGGU-----UGCUuUAGGAGCUGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 34247 | 0.67 | 0.983626 |
Target: 5'- cGAACGGGcaggacGCCAGCGccuUCCUgGGCc -3' miRNA: 3'- -CUUGCUU------UGGUUGCuuuAGGAgCUGc -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 19055 | 0.67 | 0.985689 |
Target: 5'- cGGCGGcgucGAUCAGCGu-GUCCUCGcCGa -3' miRNA: 3'- cUUGCU----UUGGUUGCuuUAGGAGCuGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 9728 | 0.67 | 0.987548 |
Target: 5'- --uCGAAGCCGcggGCGAAcUgCUCGugGu -3' miRNA: 3'- cuuGCUUUGGU---UGCUUuAgGAGCugC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 3392 | 0.66 | 0.990701 |
Target: 5'- cGAugGGuuCCAuCGGuugCCUUGGCGg -3' miRNA: 3'- -CUugCUuuGGUuGCUuuaGGAGCUGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 29397 | 0.66 | 0.992022 |
Target: 5'- -cGCGGuaGGCCAGCaGAAUCUUgGGCGc -3' miRNA: 3'- cuUGCU--UUGGUUGcUUUAGGAgCUGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 41749 | 0.66 | 0.99319 |
Target: 5'- aAACccAGCCAGCGAGGUaCCgCGGCa -3' miRNA: 3'- cUUGcuUUGGUUGCUUUA-GGaGCUGc -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 33602 | 0.66 | 0.99319 |
Target: 5'- aGGACGGuaucaaGGCCGACaccAAGUaccgCCUCGACGa -3' miRNA: 3'- -CUUGCU------UUGGUUGc--UUUA----GGAGCUGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 27492 | 0.68 | 0.976082 |
Target: 5'- -cGCGAGgauGCCGGCGg---CCUCGGCc -3' miRNA: 3'- cuUGCUU---UGGUUGCuuuaGGAGCUGc -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 32772 | 0.69 | 0.962431 |
Target: 5'- ---aGAAGgCGGCGAAGUCCgcccUCGGCa -3' miRNA: 3'- cuugCUUUgGUUGCUUUAGG----AGCUGc -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 12255 | 0.73 | 0.840725 |
Target: 5'- cGAACG-GAUCGGCGGuaguGUCCUgGGCGg -3' miRNA: 3'- -CUUGCuUUGGUUGCUu---UAGGAgCUGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 24770 | 0.71 | 0.89237 |
Target: 5'- gGAAUGAccuGCC-ACGGGucGUCCUCGAUGc -3' miRNA: 3'- -CUUGCUu--UGGuUGCUU--UAGGAGCUGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 38311 | 0.71 | 0.899948 |
Target: 5'- --cCGAAGCCGACGA---CCgCGACGa -3' miRNA: 3'- cuuGCUUUGGUUGCUuuaGGaGCUGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 26010 | 0.7 | 0.927111 |
Target: 5'- uGGCGAuuUCGAgGGcuUCCUCGGCGa -3' miRNA: 3'- cUUGCUuuGGUUgCUuuAGGAGCUGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 29333 | 0.7 | 0.933102 |
Target: 5'- uGGCGGucGCCGGCcAAGUCCUCGAa- -3' miRNA: 3'- cUUGCUu-UGGUUGcUUUAGGAGCUgc -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 31982 | 0.69 | 0.949164 |
Target: 5'- -cGCGAAcucgacGCCAgcguccuguGCGAAAcCCUCGACa -3' miRNA: 3'- cuUGCUU------UGGU---------UGCUUUaGGAGCUGc -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 1718 | 0.69 | 0.95831 |
Target: 5'- cGGCGu-GCCGGCGAgggcguccaAGUCCUCG-CGg -3' miRNA: 3'- cUUGCuuUGGUUGCU---------UUAGGAGCuGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 34181 | 0.69 | 0.962431 |
Target: 5'- cGGAUGAuuCCAGCGAcuUCgC-CGACGa -3' miRNA: 3'- -CUUGCUuuGGUUGCUuuAG-GaGCUGC- -5' |
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26499 | 3' | -46 | NC_005357.1 | + | 18527 | 0.66 | 0.994217 |
Target: 5'- cAugGAAGCCGcggGCGuggcgcacuUCCUUGGCGu -3' miRNA: 3'- cUugCUUUGGU---UGCuuu------AGGAGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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