miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26501 5' -51.5 NC_005357.1 + 22514 1.1 0.001281
Target:  5'- cGGCGGCGACAAGCUGCAAGAAAACCUu -3'
miRNA:   3'- -CCGCCGCUGUUCGACGUUCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 16499 0.82 0.125363
Target:  5'- cGCGGCGACAugcugggccaccgcaAGCUGCAAGucGAAACCc -3'
miRNA:   3'- cCGCCGCUGU---------------UCGACGUUC--UUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 1321 0.78 0.232588
Target:  5'- cGGCcaccaGGcCGACAAGC-GCGAGGAAGCCg -3'
miRNA:   3'- -CCG-----CC-GCUGUUCGaCGUUCUUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 11757 0.76 0.288737
Target:  5'- -uCGGCGACAGGUUGCAgcGGAuuuGCCg -3'
miRNA:   3'- ccGCCGCUGUUCGACGU--UCUuu-UGGa -5'
26501 5' -51.5 NC_005357.1 + 29097 0.75 0.346157
Target:  5'- cGGCGGCGAC---CUGCc-GAAAGCCUa -3'
miRNA:   3'- -CCGCCGCUGuucGACGuuCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 20511 0.74 0.363999
Target:  5'- cGGCGGUGACAucuacggcaacAGCcccGCAAuGGAAGCCUu -3'
miRNA:   3'- -CCGCCGCUGU-----------UCGa--CGUU-CUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 41452 0.73 0.421223
Target:  5'- cGGCcaGGCGGCcaaguGGCUGCAAGcu-GCCg -3'
miRNA:   3'- -CCG--CCGCUGu----UCGACGUUCuuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 14907 0.73 0.421223
Target:  5'- cGCGGCGAUcuGCUGCuGGccGGCCUc -3'
miRNA:   3'- cCGCCGCUGuuCGACGuUCuuUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 30421 0.73 0.431276
Target:  5'- cGGCauGGCGAUGAGC-GCGGGcAGGGCCUc -3'
miRNA:   3'- -CCG--CCGCUGUUCGaCGUUC-UUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 26529 0.73 0.441469
Target:  5'- aGCaGCGGCAAGCUGCu---GGGCCUc -3'
miRNA:   3'- cCGcCGCUGUUCGACGuucuUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 18028 0.73 0.451796
Target:  5'- uGCGGguucuuguCGGCGGGCUGCuuGggGGCCUu -3'
miRNA:   3'- cCGCC--------GCUGUUCGACGuuCuuUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 41387 0.72 0.462254
Target:  5'- cGCGGCGACAuGCUGCcgcc-GGCCg -3'
miRNA:   3'- cCGCCGCUGUuCGACGuucuuUUGGa -5'
26501 5' -51.5 NC_005357.1 + 17113 0.72 0.483544
Target:  5'- -cCGGCGACGAGCgccggugGCAGGGccGGCCg -3'
miRNA:   3'- ccGCCGCUGUUCGa------CGUUCUu-UUGGa -5'
26501 5' -51.5 NC_005357.1 + 10212 0.71 0.515216
Target:  5'- uGGUGGUgaguucgGACAGGC-GCGAGAAAACa- -3'
miRNA:   3'- -CCGCCG-------CUGUUCGaCGUUCUUUUGga -5'
26501 5' -51.5 NC_005357.1 + 36287 0.71 0.516324
Target:  5'- cGGCGGCGAguGGgUGCugauGGAAGGgCa -3'
miRNA:   3'- -CCGCCGCUguUCgACGu---UCUUUUgGa -5'
26501 5' -51.5 NC_005357.1 + 9901 0.71 0.538667
Target:  5'- cGUGGCGAuguCGAGCUGCAcuucgaGGAAAaagugGCCg -3'
miRNA:   3'- cCGCCGCU---GUUCGACGU------UCUUU-----UGGa -5'
26501 5' -51.5 NC_005357.1 + 1104 0.71 0.549963
Target:  5'- uGGCGGCGGUAGGCgGCAaAGGcuuGCCg -3'
miRNA:   3'- -CCGCCGCUGUUCGaCGU-UCUuu-UGGa -5'
26501 5' -51.5 NC_005357.1 + 13324 0.7 0.572762
Target:  5'- aGGCGGCG-UAGGCUuucgGCAGGuc-GCCg -3'
miRNA:   3'- -CCGCCGCuGUUCGA----CGUUCuuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 29517 0.7 0.580796
Target:  5'- uGGCGaCGACAGGCUGUgcccccuggccgcaGAGGAcACCc -3'
miRNA:   3'- -CCGCcGCUGUUCGACG--------------UUCUUuUGGa -5'
26501 5' -51.5 NC_005357.1 + 12309 0.7 0.584247
Target:  5'- cGGCGGCGuCGAauucGUUGCucauuuacGGGAAACCUu -3'
miRNA:   3'- -CCGCCGCuGUU----CGACGu-------UCUUUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.