miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26501 5' -51.5 NC_005357.1 + 7685 0.66 0.797708
Target:  5'- uGGCGGCGAUcuGCgGCcGGu-AGCCc -3'
miRNA:   3'- -CCGCCGCUGuuCGaCGuUCuuUUGGa -5'
26501 5' -51.5 NC_005357.1 + 18818 0.69 0.646768
Target:  5'- uGGCGGCG-CAggaAGCUGCgaAuuuugcgcggcauguAGAAGGCCg -3'
miRNA:   3'- -CCGCCGCuGU---UCGACG--U---------------UCUUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 23652 0.68 0.688314
Target:  5'- cGGCGGCGggcaGCAA-CUGCAccAGgcGACCc -3'
miRNA:   3'- -CCGCCGC----UGUUcGACGU--UCuuUUGGa -5'
26501 5' -51.5 NC_005357.1 + 31339 0.68 0.699743
Target:  5'- cGCGGCGACAuucaAGCaguaccUGgAAGAAGACg- -3'
miRNA:   3'- cCGCCGCUGU----UCG------ACgUUCUUUUGga -5'
26501 5' -51.5 NC_005357.1 + 11421 0.68 0.711098
Target:  5'- aGCGGCGAgCcGGCgUGCAGGuc-GCCg -3'
miRNA:   3'- cCGCCGCU-GuUCG-ACGUUCuuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 34047 0.67 0.766312
Target:  5'- gGGCGGCGAUucucgaagauucGAGCgcggcggcGCAGGAGGuACUg -3'
miRNA:   3'- -CCGCCGCUG------------UUCGa-------CGUUCUUU-UGGa -5'
26501 5' -51.5 NC_005357.1 + 4825 0.67 0.776948
Target:  5'- uGGcCGGCGACAGGUcGCcguAGucgauGACCa -3'
miRNA:   3'- -CC-GCCGCUGUUCGaCGu--UCuu---UUGGa -5'
26501 5' -51.5 NC_005357.1 + 35029 0.67 0.787418
Target:  5'- -cCGGCuuCAAGCUGguGGAAGgucGCCg -3'
miRNA:   3'- ccGCCGcuGUUCGACguUCUUU---UGGa -5'
26501 5' -51.5 NC_005357.1 + 27441 0.67 0.787418
Target:  5'- cGGCGGCcGCAGGCccugGCGcuGGuauGCCa -3'
miRNA:   3'- -CCGCCGcUGUUCGa---CGU--UCuuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 9342 0.7 0.618927
Target:  5'- gGGCGGCGGCAuccuuuugcAGUUGCuugauGAugcGGCCg -3'
miRNA:   3'- -CCGCCGCUGU---------UCGACGuu---CUu--UUGGa -5'
26501 5' -51.5 NC_005357.1 + 21454 0.7 0.584247
Target:  5'- uGCGGCGG-GGGCgGCAGGAuguuGGCCUc -3'
miRNA:   3'- cCGCCGCUgUUCGaCGUUCUu---UUGGA- -5'
26501 5' -51.5 NC_005357.1 + 12309 0.7 0.584247
Target:  5'- cGGCGGCGuCGAauucGUUGCucauuuacGGGAAACCUu -3'
miRNA:   3'- -CCGCCGCuGUU----CGACGu-------UCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 11757 0.76 0.288737
Target:  5'- -uCGGCGACAGGUUGCAgcGGAuuuGCCg -3'
miRNA:   3'- ccGCCGCUGUUCGACGU--UCUuu-UGGa -5'
26501 5' -51.5 NC_005357.1 + 14907 0.73 0.421223
Target:  5'- cGCGGCGAUcuGCUGCuGGccGGCCUc -3'
miRNA:   3'- cCGCCGCUGuuCGACGuUCuuUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 30421 0.73 0.431276
Target:  5'- cGGCauGGCGAUGAGC-GCGGGcAGGGCCUc -3'
miRNA:   3'- -CCG--CCGCUGUUCGaCGUUC-UUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 18028 0.73 0.451796
Target:  5'- uGCGGguucuuguCGGCGGGCUGCuuGggGGCCUu -3'
miRNA:   3'- cCGCC--------GCUGUUCGACGuuCuuUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 36287 0.71 0.516324
Target:  5'- cGGCGGCGAguGGgUGCugauGGAAGGgCa -3'
miRNA:   3'- -CCGCCGCUguUCgACGu---UCUUUUgGa -5'
26501 5' -51.5 NC_005357.1 + 9901 0.71 0.538667
Target:  5'- cGUGGCGAuguCGAGCUGCAcuucgaGGAAAaagugGCCg -3'
miRNA:   3'- cCGCCGCU---GUUCGACGU------UCUUU-----UGGa -5'
26501 5' -51.5 NC_005357.1 + 13324 0.7 0.572762
Target:  5'- aGGCGGCG-UAGGCUuucgGCAGGuc-GCCg -3'
miRNA:   3'- -CCGCCGCuGUUCGA----CGUUCuuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 29517 0.7 0.580796
Target:  5'- uGGCGaCGACAGGCUGUgcccccuggccgcaGAGGAcACCc -3'
miRNA:   3'- -CCGCcGCUGUUCGACG--------------UUCUUuUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.