miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26501 5' -51.5 NC_005357.1 + 22514 1.1 0.001281
Target:  5'- cGGCGGCGACAAGCUGCAAGAAAACCUu -3'
miRNA:   3'- -CCGCCGCUGUUCGACGUUCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 14724 0.68 0.688314
Target:  5'- cGGCGGCGAgccGCUGCcGGcgcgcGGCCUg -3'
miRNA:   3'- -CCGCCGCUguuCGACGuUCuu---UUGGA- -5'
26501 5' -51.5 NC_005357.1 + 25484 0.68 0.688314
Target:  5'- -aCGGCGGCAcGCUGCuGGAcggcGCCg -3'
miRNA:   3'- ccGCCGCUGUuCGACGuUCUuu--UGGa -5'
26501 5' -51.5 NC_005357.1 + 38811 0.66 0.846034
Target:  5'- cGGCGGCGugAauGGC-GCAuccGAAuacacGGCCa -3'
miRNA:   3'- -CCGCCGCugU--UCGaCGUu--CUU-----UUGGa -5'
26501 5' -51.5 NC_005357.1 + 41452 0.73 0.421223
Target:  5'- cGGCcaGGCGGCcaaguGGCUGCAAGcu-GCCg -3'
miRNA:   3'- -CCG--CCGCUGu----UCGACGUUCuuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 26529 0.73 0.441469
Target:  5'- aGCaGCGGCAAGCUGCu---GGGCCUc -3'
miRNA:   3'- cCGcCGCUGUUCGACGuucuUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 17113 0.72 0.483544
Target:  5'- -cCGGCGACGAGCgccggugGCAGGGccGGCCg -3'
miRNA:   3'- ccGCCGCUGUUCGa------CGUUCUu-UUGGa -5'
26501 5' -51.5 NC_005357.1 + 10212 0.71 0.515216
Target:  5'- uGGUGGUgaguucgGACAGGC-GCGAGAAAACa- -3'
miRNA:   3'- -CCGCCG-------CUGUUCGaCGUUCUUUUGga -5'
26501 5' -51.5 NC_005357.1 + 37263 0.69 0.64097
Target:  5'- aGGCGGUGGCAGGCaaUGCGGcAAAcaucaacgucguaGCCg -3'
miRNA:   3'- -CCGCCGCUGUUCG--ACGUUcUUU-------------UGGa -5'
26501 5' -51.5 NC_005357.1 + 14685 0.68 0.688314
Target:  5'- --gGGCaGCGAGUUGCGcGAGGGCCUc -3'
miRNA:   3'- ccgCCGcUGUUCGACGUuCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 42254 0.69 0.64213
Target:  5'- cGGUGcccaGCGACAccggGGCgcauccgccUGCGGGGAAGCCUg -3'
miRNA:   3'- -CCGC----CGCUGU----UCG---------ACGUUCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 4043 0.7 0.595776
Target:  5'- cGGCcGCGGCGAGCgGCAGGccagcGGCCc -3'
miRNA:   3'- -CCGcCGCUGUUCGaCGUUCuu---UUGGa -5'
26501 5' -51.5 NC_005357.1 + 16499 0.82 0.125363
Target:  5'- cGCGGCGACAugcugggccaccgcaAGCUGCAAGucGAAACCc -3'
miRNA:   3'- cCGCCGCUGU---------------UCGACGUUC--UUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 6642 0.69 0.653721
Target:  5'- cGCGGacaCGuACAGGUUGCcGGGGAAGCCg -3'
miRNA:   3'- cCGCC---GC-UGUUCGACG-UUCUUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 29097 0.75 0.346157
Target:  5'- cGGCGGCGAC---CUGCc-GAAAGCCUa -3'
miRNA:   3'- -CCGCCGCUGuucGACGuuCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 1104 0.71 0.549963
Target:  5'- uGGCGGCGGUAGGCgGCAaAGGcuuGCCg -3'
miRNA:   3'- -CCGCCGCUGUUCGaCGU-UCUuu-UGGa -5'
26501 5' -51.5 NC_005357.1 + 38547 0.69 0.676826
Target:  5'- cGGCGGCGACG-GCaGCGc---GGCCUa -3'
miRNA:   3'- -CCGCCGCUGUuCGaCGUucuuUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 18166 0.68 0.688314
Target:  5'- cGGCgccacgcucaaGGUGGCAAGCcGCGAGGAcAUCa -3'
miRNA:   3'- -CCG-----------CCGCUGUUCGaCGUUCUUuUGGa -5'
26501 5' -51.5 NC_005357.1 + 20511 0.74 0.363999
Target:  5'- cGGCGGUGACAucuacggcaacAGCcccGCAAuGGAAGCCUu -3'
miRNA:   3'- -CCGCCGCUGU-----------UCGa--CGUU-CUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 41387 0.72 0.462254
Target:  5'- cGCGGCGACAuGCUGCcgcc-GGCCg -3'
miRNA:   3'- cCGCCGCUGUuCGACGuucuuUUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.