miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26501 5' -51.5 NC_005357.1 + 1724 0.66 0.797708
Target:  5'- cGGUGGCGACAAugUGguAGAugaacACCg -3'
miRNA:   3'- -CCGCCGCUGUUcgACguUCUuu---UGGa -5'
26501 5' -51.5 NC_005357.1 + 7739 0.66 0.8177
Target:  5'- cGGCGGcCGGCuuGCUGUuggcgacgAAGGAAuCCa -3'
miRNA:   3'- -CCGCC-GCUGuuCGACG--------UUCUUUuGGa -5'
26501 5' -51.5 NC_005357.1 + 10722 0.68 0.722367
Target:  5'- cGCGcGCGGCGGGCUGguCAGGcgGugCUg -3'
miRNA:   3'- cCGC-CGCUGUUCGAC--GUUCuuUugGA- -5'
26501 5' -51.5 NC_005357.1 + 25484 0.68 0.688314
Target:  5'- -aCGGCGGCAcGCUGCuGGAcggcGCCg -3'
miRNA:   3'- ccGCCGCUGUuCGACGuUCUuu--UGGa -5'
26501 5' -51.5 NC_005357.1 + 5069 0.66 0.846034
Target:  5'- aGGCcGCGGCAGGUuuUGCGguuGGAAcaggcGGCCg -3'
miRNA:   3'- -CCGcCGCUGUUCG--ACGU---UCUU-----UUGGa -5'
26501 5' -51.5 NC_005357.1 + 7394 0.66 0.814754
Target:  5'- cGCGGCGACcuuccaccagcuugAAGCcggGCAccGGAugGCCg -3'
miRNA:   3'- cCGCCGCUG--------------UUCGa--CGU--UCUuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 18166 0.68 0.688314
Target:  5'- cGGCgccacgcucaaGGUGGCAAGCcGCGAGGAcAUCa -3'
miRNA:   3'- -CCG-----------CCGCUGUUCGaCGUUCUUuUGGa -5'
26501 5' -51.5 NC_005357.1 + 24662 0.66 0.836824
Target:  5'- cGCGcGCGACucGCUGCucGAAcugcacACCUg -3'
miRNA:   3'- cCGC-CGCUGuuCGACGuuCUUu-----UGGA- -5'
26501 5' -51.5 NC_005357.1 + 14724 0.68 0.688314
Target:  5'- cGGCGGCGAgccGCUGCcGGcgcgcGGCCUg -3'
miRNA:   3'- -CCGCCGCUguuCGACGuUCuu---UUGGA- -5'
26501 5' -51.5 NC_005357.1 + 41259 0.66 0.827376
Target:  5'- -cCGGCGGCGAGacuaUGUggGGcguGACCg -3'
miRNA:   3'- ccGCCGCUGUUCg---ACGuuCUu--UUGGa -5'
26501 5' -51.5 NC_005357.1 + 38811 0.66 0.846034
Target:  5'- cGGCGGCGugAauGGC-GCAuccGAAuacacGGCCa -3'
miRNA:   3'- -CCGCCGCugU--UCGaCGUu--CUU-----UUGGa -5'
26501 5' -51.5 NC_005357.1 + 31836 0.67 0.787418
Target:  5'- uGCGGUG-CAGGCUGCGc----GCCUg -3'
miRNA:   3'- cCGCCGCuGUUCGACGUucuuuUGGA- -5'
26501 5' -51.5 NC_005357.1 + 24443 0.68 0.699743
Target:  5'- cGGCGGCGACuuGgUGUAAcGAGucuCCUu -3'
miRNA:   3'- -CCGCCGCUGuuCgACGUU-CUUuu-GGA- -5'
26501 5' -51.5 NC_005357.1 + 10078 0.68 0.688314
Target:  5'- cGGCGGCGACcgcagcgaccuGGGCgGCGguugucGGGAcGCCg -3'
miRNA:   3'- -CCGCCGCUG-----------UUCGaCGU------UCUUuUGGa -5'
26501 5' -51.5 NC_005357.1 + 14685 0.68 0.688314
Target:  5'- --gGGCaGCGAGUUGCGcGAGGGCCUc -3'
miRNA:   3'- ccgCCGcUGUUCGACGUuCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 9901 0.71 0.538667
Target:  5'- cGUGGCGAuguCGAGCUGCAcuucgaGGAAAaagugGCCg -3'
miRNA:   3'- cCGCCGCU---GUUCGACGU------UCUUU-----UGGa -5'
26501 5' -51.5 NC_005357.1 + 31339 0.68 0.699743
Target:  5'- cGCGGCGACAuucaAGCaguaccUGgAAGAAGACg- -3'
miRNA:   3'- cCGCCGCUGU----UCG------ACgUUCUUUUGga -5'
26501 5' -51.5 NC_005357.1 + 38188 0.66 0.846034
Target:  5'- -aCGGCGGgAAGCUGgcAGAAAACg- -3'
miRNA:   3'- ccGCCGCUgUUCGACguUCUUUUGga -5'
26501 5' -51.5 NC_005357.1 + 41978 0.66 0.836824
Target:  5'- uGGUGcGCGGCGAGCagaaggacaGCAcuAAGACCa -3'
miRNA:   3'- -CCGC-CGCUGUUCGa--------CGUucUUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 23652 0.68 0.688314
Target:  5'- cGGCGGCGggcaGCAA-CUGCAccAGgcGACCc -3'
miRNA:   3'- -CCGCCGC----UGUUcGACGU--UCuuUUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.