miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26501 5' -51.5 NC_005357.1 + 14724 0.68 0.688314
Target:  5'- cGGCGGCGAgccGCUGCcGGcgcgcGGCCUg -3'
miRNA:   3'- -CCGCCGCUguuCGACGuUCuu---UUGGA- -5'
26501 5' -51.5 NC_005357.1 + 14907 0.73 0.421223
Target:  5'- cGCGGCGAUcuGCUGCuGGccGGCCUc -3'
miRNA:   3'- cCGCCGCUGuuCGACGuUCuuUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 15151 0.66 0.836824
Target:  5'- aGGCGcGCGGCGAaCUGCGguucauugccucGGccaAGAGCCUg -3'
miRNA:   3'- -CCGC-CGCUGUUcGACGU------------UC---UUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 15919 0.66 0.834015
Target:  5'- uGGCGGUGaaugaugccggcuuGCGAGUcgGCGAGGAucACCc -3'
miRNA:   3'- -CCGCCGC--------------UGUUCGa-CGUUCUUu-UGGa -5'
26501 5' -51.5 NC_005357.1 + 16499 0.82 0.125363
Target:  5'- cGCGGCGACAugcugggccaccgcaAGCUGCAAGucGAAACCc -3'
miRNA:   3'- cCGCCGCUGU---------------UCGACGUUC--UUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 16578 0.66 0.827376
Target:  5'- -aCGGCGACAAGaccaGCAuGGAAcuGACCg -3'
miRNA:   3'- ccGCCGCUGUUCga--CGU-UCUU--UUGGa -5'
26501 5' -51.5 NC_005357.1 + 16908 0.66 0.826419
Target:  5'- cGGCGGCGGCAAaaccgaccucaucGCggGCcuGAcccuGACCa -3'
miRNA:   3'- -CCGCCGCUGUU-------------CGa-CGuuCUu---UUGGa -5'
26501 5' -51.5 NC_005357.1 + 17113 0.72 0.483544
Target:  5'- -cCGGCGACGAGCgccggugGCAGGGccGGCCg -3'
miRNA:   3'- ccGCCGCUGUUCGa------CGUUCUu-UUGGa -5'
26501 5' -51.5 NC_005357.1 + 18028 0.73 0.451796
Target:  5'- uGCGGguucuuguCGGCGGGCUGCuuGggGGCCUu -3'
miRNA:   3'- cCGCC--------GCUGUUCGACGuuCuuUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 18166 0.68 0.688314
Target:  5'- cGGCgccacgcucaaGGUGGCAAGCcGCGAGGAcAUCa -3'
miRNA:   3'- -CCG-----------CCGCUGUUCGaCGUUCUUuUGGa -5'
26501 5' -51.5 NC_005357.1 + 18818 0.69 0.646768
Target:  5'- uGGCGGCG-CAggaAGCUGCgaAuuuugcgcggcauguAGAAGGCCg -3'
miRNA:   3'- -CCGCCGCuGU---UCGACG--U---------------UCUUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 20511 0.74 0.363999
Target:  5'- cGGCGGUGACAucuacggcaacAGCcccGCAAuGGAAGCCUu -3'
miRNA:   3'- -CCGCCGCUGU-----------UCGa--CGUU-CUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 21454 0.7 0.584247
Target:  5'- uGCGGCGG-GGGCgGCAGGAuguuGGCCUc -3'
miRNA:   3'- cCGCCGCUgUUCGaCGUUCUu---UUGGA- -5'
26501 5' -51.5 NC_005357.1 + 22514 1.1 0.001281
Target:  5'- cGGCGGCGACAAGCUGCAAGAAAACCUu -3'
miRNA:   3'- -CCGCCGCUGUUCGACGUUCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 23652 0.68 0.688314
Target:  5'- cGGCGGCGggcaGCAA-CUGCAccAGgcGACCc -3'
miRNA:   3'- -CCGCCGC----UGUUcGACGU--UCuuUUGGa -5'
26501 5' -51.5 NC_005357.1 + 24443 0.68 0.699743
Target:  5'- cGGCGGCGACuuGgUGUAAcGAGucuCCUu -3'
miRNA:   3'- -CCGCCGCUGuuCgACGUU-CUUuu-GGA- -5'
26501 5' -51.5 NC_005357.1 + 24662 0.66 0.836824
Target:  5'- cGCGcGCGACucGCUGCucGAAcugcacACCUg -3'
miRNA:   3'- cCGC-CGCUGuuCGACGuuCUUu-----UGGA- -5'
26501 5' -51.5 NC_005357.1 + 25484 0.68 0.688314
Target:  5'- -aCGGCGGCAcGCUGCuGGAcggcGCCg -3'
miRNA:   3'- ccGCCGCUGUuCGACGuUCUuu--UGGa -5'
26501 5' -51.5 NC_005357.1 + 26529 0.73 0.441469
Target:  5'- aGCaGCGGCAAGCUGCu---GGGCCUc -3'
miRNA:   3'- cCGcCGCUGUUCGACGuucuUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 27441 0.67 0.787418
Target:  5'- cGGCGGCcGCAGGCccugGCGcuGGuauGCCa -3'
miRNA:   3'- -CCGCCGcUGUUCGa---CGU--UCuuuUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.