miRNA display CGI


Results 41 - 60 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26501 5' -51.5 NC_005357.1 + 29097 0.75 0.346157
Target:  5'- cGGCGGCGAC---CUGCc-GAAAGCCUa -3'
miRNA:   3'- -CCGCCGCUGuucGACGuuCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 29517 0.7 0.580796
Target:  5'- uGGCGaCGACAGGCUGUgcccccuggccgcaGAGGAcACCc -3'
miRNA:   3'- -CCGCcGCUGUUCGACG--------------UUCUUuUGGa -5'
26501 5' -51.5 NC_005357.1 + 30421 0.73 0.431276
Target:  5'- cGGCauGGCGAUGAGC-GCGGGcAGGGCCUc -3'
miRNA:   3'- -CCG--CCGCUGUUCGaCGUUC-UUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 31339 0.68 0.699743
Target:  5'- cGCGGCGACAuucaAGCaguaccUGgAAGAAGACg- -3'
miRNA:   3'- cCGCCGCUGU----UCG------ACgUUCUUUUGga -5'
26501 5' -51.5 NC_005357.1 + 31836 0.67 0.787418
Target:  5'- uGCGGUG-CAGGCUGCGc----GCCUg -3'
miRNA:   3'- cCGCCGCuGUUCGACGUucuuuUGGA- -5'
26501 5' -51.5 NC_005357.1 + 32940 0.66 0.827376
Target:  5'- cGGCcagGGCGACcacGGCUGCGucgauuacuGGcAAGACCc -3'
miRNA:   3'- -CCG---CCGCUGu--UCGACGU---------UC-UUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 33758 0.66 0.827376
Target:  5'- gGGCGGCGcaGCAGccGCUGCAcacagcgaguacGGcgcGGCCUg -3'
miRNA:   3'- -CCGCCGC--UGUU--CGACGU------------UCuu-UUGGA- -5'
26501 5' -51.5 NC_005357.1 + 34047 0.67 0.766312
Target:  5'- gGGCGGCGAUucucgaagauucGAGCgcggcggcGCAGGAGGuACUg -3'
miRNA:   3'- -CCGCCGCUG------------UUCGa-------CGUUCUUU-UGGa -5'
26501 5' -51.5 NC_005357.1 + 35029 0.67 0.787418
Target:  5'- -cCGGCuuCAAGCUGguGGAAGgucGCCg -3'
miRNA:   3'- ccGCCGcuGUUCGACguUCUUU---UGGa -5'
26501 5' -51.5 NC_005357.1 + 36287 0.71 0.516324
Target:  5'- cGGCGGCGAguGGgUGCugauGGAAGGgCa -3'
miRNA:   3'- -CCGCCGCUguUCgACGu---UCUUUUgGa -5'
26501 5' -51.5 NC_005357.1 + 37263 0.69 0.64097
Target:  5'- aGGCGGUGGCAGGCaaUGCGGcAAAcaucaacgucguaGCCg -3'
miRNA:   3'- -CCGCCGCUGUUCG--ACGUUcUUU-------------UGGa -5'
26501 5' -51.5 NC_005357.1 + 38188 0.66 0.846034
Target:  5'- -aCGGCGGgAAGCUGgcAGAAAACg- -3'
miRNA:   3'- ccGCCGCUgUUCGACguUCUUUUGga -5'
26501 5' -51.5 NC_005357.1 + 38547 0.69 0.676826
Target:  5'- cGGCGGCGACG-GCaGCGc---GGCCUa -3'
miRNA:   3'- -CCGCCGCUGUuCGaCGUucuuUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 38811 0.66 0.846034
Target:  5'- cGGCGGCGugAauGGC-GCAuccGAAuacacGGCCa -3'
miRNA:   3'- -CCGCCGCugU--UCGaCGUu--CUU-----UUGGa -5'
26501 5' -51.5 NC_005357.1 + 41259 0.66 0.827376
Target:  5'- -cCGGCGGCGAGacuaUGUggGGcguGACCg -3'
miRNA:   3'- ccGCCGCUGUUCg---ACGuuCUu--UUGGa -5'
26501 5' -51.5 NC_005357.1 + 41387 0.72 0.462254
Target:  5'- cGCGGCGACAuGCUGCcgcc-GGCCg -3'
miRNA:   3'- cCGCCGCUGUuCGACGuucuuUUGGa -5'
26501 5' -51.5 NC_005357.1 + 41452 0.73 0.421223
Target:  5'- cGGCcaGGCGGCcaaguGGCUGCAAGcu-GCCg -3'
miRNA:   3'- -CCG--CCGCUGu----UCGACGUUCuuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 41978 0.66 0.836824
Target:  5'- uGGUGcGCGGCGAGCagaaggacaGCAcuAAGACCa -3'
miRNA:   3'- -CCGC-CGCUGUUCGa--------CGUucUUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 42083 0.69 0.64213
Target:  5'- uGGCGGaCGGCcuGCUGCGcGAc-GCCa -3'
miRNA:   3'- -CCGCC-GCUGuuCGACGUuCUuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 42254 0.69 0.64213
Target:  5'- cGGUGcccaGCGACAccggGGCgcauccgccUGCGGGGAAGCCUg -3'
miRNA:   3'- -CCGC----CGCUGU----UCG---------ACGUUCUUUUGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.