miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26501 5' -51.5 NC_005357.1 + 34047 0.67 0.766312
Target:  5'- gGGCGGCGAUucucgaagauucGAGCgcggcggcGCAGGAGGuACUg -3'
miRNA:   3'- -CCGCCGCUG------------UUCGa-------CGUUCUUU-UGGa -5'
26501 5' -51.5 NC_005357.1 + 10722 0.68 0.722367
Target:  5'- cGCGcGCGGCGGGCUGguCAGGcgGugCUg -3'
miRNA:   3'- cCGC-CGCUGUUCGAC--GUUCuuUugGA- -5'
26501 5' -51.5 NC_005357.1 + 11421 0.68 0.711098
Target:  5'- aGCGGCGAgCcGGCgUGCAGGuc-GCCg -3'
miRNA:   3'- cCGCCGCU-GuUCG-ACGUUCuuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 24443 0.68 0.699743
Target:  5'- cGGCGGCGACuuGgUGUAAcGAGucuCCUu -3'
miRNA:   3'- -CCGCCGCUGuuCgACGUU-CUUuu-GGA- -5'
26501 5' -51.5 NC_005357.1 + 31339 0.68 0.699743
Target:  5'- cGCGGCGACAuucaAGCaguaccUGgAAGAAGACg- -3'
miRNA:   3'- cCGCCGCUGU----UCG------ACgUUCUUUUGga -5'
26501 5' -51.5 NC_005357.1 + 10078 0.68 0.688314
Target:  5'- cGGCGGCGACcgcagcgaccuGGGCgGCGguugucGGGAcGCCg -3'
miRNA:   3'- -CCGCCGCUG-----------UUCGaCGU------UCUUuUGGa -5'
26501 5' -51.5 NC_005357.1 + 14724 0.68 0.688314
Target:  5'- cGGCGGCGAgccGCUGCcGGcgcgcGGCCUg -3'
miRNA:   3'- -CCGCCGCUguuCGACGuUCuu---UUGGA- -5'
26501 5' -51.5 NC_005357.1 + 14685 0.68 0.688314
Target:  5'- --gGGCaGCGAGUUGCGcGAGGGCCUc -3'
miRNA:   3'- ccgCCGcUGUUCGACGUuCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 25484 0.68 0.688314
Target:  5'- -aCGGCGGCAcGCUGCuGGAcggcGCCg -3'
miRNA:   3'- ccGCCGCUGUuCGACGuUCUuu--UGGa -5'
26501 5' -51.5 NC_005357.1 + 23652 0.68 0.688314
Target:  5'- cGGCGGCGggcaGCAA-CUGCAccAGgcGACCc -3'
miRNA:   3'- -CCGCCGC----UGUUcGACGU--UCuuUUGGa -5'
26501 5' -51.5 NC_005357.1 + 18166 0.68 0.688314
Target:  5'- cGGCgccacgcucaaGGUGGCAAGCcGCGAGGAcAUCa -3'
miRNA:   3'- -CCG-----------CCGCUGUUCGaCGUUCUUuUGGa -5'
26501 5' -51.5 NC_005357.1 + 38547 0.69 0.676826
Target:  5'- cGGCGGCGACG-GCaGCGc---GGCCUa -3'
miRNA:   3'- -CCGCCGCUGUuCGaCGUucuuUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 6642 0.69 0.653721
Target:  5'- cGCGGacaCGuACAGGUUGCcGGGGAAGCCg -3'
miRNA:   3'- cCGCC---GC-UGUUCGACG-UUCUUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 18818 0.69 0.646768
Target:  5'- uGGCGGCG-CAggaAGCUGCgaAuuuugcgcggcauguAGAAGGCCg -3'
miRNA:   3'- -CCGCCGCuGU---UCGACG--U---------------UCUUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 42083 0.69 0.64213
Target:  5'- uGGCGGaCGGCcuGCUGCGcGAc-GCCa -3'
miRNA:   3'- -CCGCC-GCUGuuCGACGUuCUuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 42254 0.69 0.64213
Target:  5'- cGGUGcccaGCGACAccggGGCgcauccgccUGCGGGGAAGCCUg -3'
miRNA:   3'- -CCGC----CGCUGU----UCG---------ACGUUCUUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 37263 0.69 0.64097
Target:  5'- aGGCGGUGGCAGGCaaUGCGGcAAAcaucaacgucguaGCCg -3'
miRNA:   3'- -CCGCCGCUGUUCG--ACGUUcUUU-------------UGGa -5'
26501 5' -51.5 NC_005357.1 + 9342 0.7 0.618927
Target:  5'- gGGCGGCGGCAuccuuuugcAGUUGCuugauGAugcGGCCg -3'
miRNA:   3'- -CCGCCGCUGU---------UCGACGuu---CUu--UUGGa -5'
26501 5' -51.5 NC_005357.1 + 4043 0.7 0.595776
Target:  5'- cGGCcGCGGCGAGCgGCAGGccagcGGCCc -3'
miRNA:   3'- -CCGcCGCUGUUCGaCGUUCuu---UUGGa -5'
26501 5' -51.5 NC_005357.1 + 12309 0.7 0.584247
Target:  5'- cGGCGGCGuCGAauucGUUGCucauuuacGGGAAACCUu -3'
miRNA:   3'- -CCGCCGCuGUU----CGACGu-------UCUUUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.