Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26502 | 5' | -57.9 | NC_005357.1 | + | 22419 | 1.12 | 0.000206 |
Target: 5'- cAGGCGCGCCAUGCCGAGCAAGUUGGCg -3' miRNA: 3'- -UCCGCGCGGUACGGCUCGUUCAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 12417 | 0.75 | 0.118744 |
Target: 5'- aGGGCGCgGCCGUGCaguugGAGCAcGaUGGCc -3' miRNA: 3'- -UCCGCG-CGGUACGg----CUCGUuCaACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 13755 | 0.75 | 0.122161 |
Target: 5'- uGGCGCGCCGcGCUG-GCGAGgccgccGGCa -3' miRNA: 3'- uCCGCGCGGUaCGGCuCGUUCaa----CCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 29805 | 0.74 | 0.140653 |
Target: 5'- cGGCaGCaGCgAUGCCGAGCGcGUcGGCg -3' miRNA: 3'- uCCG-CG-CGgUACGGCUCGUuCAaCCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 26113 | 0.73 | 0.163475 |
Target: 5'- -cGUGCGCCAUGCCG-GCAuguGUucgucgcggcagauuUGGCg -3' miRNA: 3'- ucCGCGCGGUACGGCuCGUu--CA---------------ACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 26688 | 0.73 | 0.170852 |
Target: 5'- gAGGUGCGgUAUGUCGAGCGca-UGGCc -3' miRNA: 3'- -UCCGCGCgGUACGGCUCGUucaACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 35344 | 0.73 | 0.180491 |
Target: 5'- uGGGCGCGCCGUggguagGCCGcGGCGucaugaAGUaccUGGCc -3' miRNA: 3'- -UCCGCGCGGUA------CGGC-UCGU------UCA---ACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 15895 | 0.73 | 0.180491 |
Target: 5'- aGGGCgGCGCCAUGCUGAaaaccgUGGCg -3' miRNA: 3'- -UCCG-CGCGGUACGGCUcguucaACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 25863 | 0.72 | 0.183977 |
Target: 5'- cGGCGCGUCGcGCUacaacgucuauaagGAGCAAGgcGGCc -3' miRNA: 3'- uCCGCGCGGUaCGG--------------CUCGUUCaaCCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 12764 | 0.72 | 0.190609 |
Target: 5'- cGGcCGCGCCcUGCUGGGCAAc--GGCu -3' miRNA: 3'- uCC-GCGCGGuACGGCUCGUUcaaCCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 805 | 0.72 | 0.192691 |
Target: 5'- cGGCgacGCGCCGcgcccagcccuUGCCGAacgucggccagguggGCAGGUUGGUg -3' miRNA: 3'- uCCG---CGCGGU-----------ACGGCU---------------CGUUCAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 24184 | 0.72 | 0.201221 |
Target: 5'- cGGCGUGuCCAUGagcgCGAGCAcGUaGGCg -3' miRNA: 3'- uCCGCGC-GGUACg---GCUCGUuCAaCCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 12999 | 0.72 | 0.201221 |
Target: 5'- uGGGCGCGaCGUG-CGAGCGcGUgGGCa -3' miRNA: 3'- -UCCGCGCgGUACgGCUCGUuCAaCCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 3722 | 0.72 | 0.206717 |
Target: 5'- uGGCGC-CCGUGCCGuucacGCcGGUggugGGCa -3' miRNA: 3'- uCCGCGcGGUACGGCu----CGuUCAa---CCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 25801 | 0.72 | 0.208952 |
Target: 5'- cGGCGCGCUcgGuaucguugaucugcaCCGGGCcgccGUUGGCg -3' miRNA: 3'- uCCGCGCGGuaC---------------GGCUCGuu--CAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 4181 | 0.72 | 0.212343 |
Target: 5'- cGGC-CGCCucgAUGgCGGGCAuGUUGGCc -3' miRNA: 3'- uCCGcGCGG---UACgGCUCGUuCAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 12539 | 0.71 | 0.2181 |
Target: 5'- cGGCcUGUCAUGCCGGGgGGGgUGGUg -3' miRNA: 3'- uCCGcGCGGUACGGCUCgUUCaACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 25486 | 0.71 | 0.230014 |
Target: 5'- aGGGCGCGCuCGUGCUuGGuCAGGgucaGGCc -3' miRNA: 3'- -UCCGCGCG-GUACGGcUC-GUUCaa--CCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 12013 | 0.71 | 0.236175 |
Target: 5'- -cGCGCucaucGCCAUGCCGAGCGAaagcgUGGa -3' miRNA: 3'- ucCGCG-----CGGUACGGCUCGUUca---ACCg -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 24598 | 0.71 | 0.236175 |
Target: 5'- cGGCGUGuCCuUGCCGGGguAGgucagcGGCa -3' miRNA: 3'- uCCGCGC-GGuACGGCUCguUCaa----CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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