Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26502 | 5' | -57.9 | NC_005357.1 | + | 13465 | 0.68 | 0.371597 |
Target: 5'- cGG-GCGCgGUGUCGGGCAugaccugGGCg -3' miRNA: 3'- uCCgCGCGgUACGGCUCGUucaa---CCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 38859 | 0.69 | 0.297974 |
Target: 5'- cGGCGCGUCGcugaaauuuaUGCgGcGCG-GUUGGCg -3' miRNA: 3'- uCCGCGCGGU----------ACGgCuCGUuCAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 40402 | 0.69 | 0.305566 |
Target: 5'- gAGGCG-GCCGguaUGCCGGuGCuGG-UGGCg -3' miRNA: 3'- -UCCGCgCGGU---ACGGCU-CGuUCaACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 23538 | 0.69 | 0.321191 |
Target: 5'- cGGCGCacgcggucgaugGCCucgGCCGAcaucgccgGCAGGUgcgGGCg -3' miRNA: 3'- uCCGCG------------CGGua-CGGCU--------CGUUCAa--CCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 2846 | 0.69 | 0.329226 |
Target: 5'- aAGGCcagccCGCCAaGCCGuAGC--GUUGGCa -3' miRNA: 3'- -UCCGc----GCGGUaCGGC-UCGuuCAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 12842 | 0.69 | 0.329226 |
Target: 5'- -uGCGCGCCAacucGuCCGGGCu-GUUGGUc -3' miRNA: 3'- ucCGCGCGGUa---C-GGCUCGuuCAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 1713 | 0.68 | 0.337407 |
Target: 5'- uGGGC-CGgCGUGCCG-GCGAG--GGCg -3' miRNA: 3'- -UCCGcGCgGUACGGCuCGUUCaaCCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 14425 | 0.68 | 0.337407 |
Target: 5'- cAGGCGCGCC-UGC--GGCAccguGUUGGg -3' miRNA: 3'- -UCCGCGCGGuACGgcUCGUu---CAACCg -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 14321 | 0.68 | 0.354211 |
Target: 5'- uGGcGCGCGCCuuggcugaacUGCCGGGCcuGcUGGUu -3' miRNA: 3'- -UC-CGCGCGGu---------ACGGCUCGuuCaACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 13302 | 0.7 | 0.283231 |
Target: 5'- -aGCGCGCCGggGCCG-GCGuuguAGgcGGCg -3' miRNA: 3'- ucCGCGCGGUa-CGGCuCGU----UCaaCCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 20023 | 0.7 | 0.25816 |
Target: 5'- uGGCGCGCCugcAucacaggcagcaucuUGUCGAGCAccAGUUGcGCc -3' miRNA: 3'- uCCGCGCGG---U---------------ACGGCUCGU--UCAAC-CG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 20213 | 0.7 | 0.255489 |
Target: 5'- uGGCaGCGCCcgcgGCCG-GCu-GUUGGCc -3' miRNA: 3'- uCCG-CGCGGua--CGGCuCGuuCAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 805 | 0.72 | 0.192691 |
Target: 5'- cGGCgacGCGCCGcgcccagcccuUGCCGAacgucggccagguggGCAGGUUGGUg -3' miRNA: 3'- uCCG---CGCGGU-----------ACGGCU---------------CGUUCAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 24184 | 0.72 | 0.201221 |
Target: 5'- cGGCGUGuCCAUGagcgCGAGCAcGUaGGCg -3' miRNA: 3'- uCCGCGC-GGUACg---GCUCGUuCAaCCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 3722 | 0.72 | 0.206717 |
Target: 5'- uGGCGC-CCGUGCCGuucacGCcGGUggugGGCa -3' miRNA: 3'- uCCGCGcGGUACGGCu----CGuUCAa---CCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 25801 | 0.72 | 0.208952 |
Target: 5'- cGGCGCGCUcgGuaucguugaucugcaCCGGGCcgccGUUGGCg -3' miRNA: 3'- uCCGCGCGGuaC---------------GGCUCGuu--CAACCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 25486 | 0.71 | 0.230014 |
Target: 5'- aGGGCGCGCuCGUGCUuGGuCAGGgucaGGCc -3' miRNA: 3'- -UCCGCGCG-GUACGGcUC-GUUCaa--CCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 24598 | 0.71 | 0.236175 |
Target: 5'- cGGCGUGuCCuUGCCGGGguAGgucagcGGCa -3' miRNA: 3'- uCCGCGC-GGuACGGCUCguUCaa----CCG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 4021 | 0.7 | 0.248911 |
Target: 5'- cGGCcaccaGCGUCAUGCCGcGCGGGUcGaGCg -3' miRNA: 3'- uCCG-----CGCGGUACGGCuCGUUCAaC-CG- -5' |
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26502 | 5' | -57.9 | NC_005357.1 | + | 25758 | 0.7 | 0.248911 |
Target: 5'- uGGGCGCGC--UGCUGGGCGGc--GGCa -3' miRNA: 3'- -UCCGCGCGguACGGCUCGUUcaaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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