miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26506 5' -61.7 NC_005357.1 + 9203 0.66 0.327197
Target:  5'- gCC-UGCUCggcgGCGCGGcGCacguucugCGGCGCGCc -3'
miRNA:   3'- aGGuACGAG----CGCGUC-CGg-------GUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 35710 0.66 0.326412
Target:  5'- gCCGUGCUCaaGCAGaugcgcGCCCaggacaaGGUGUGCc -3'
miRNA:   3'- aGGUACGAGcgCGUC------CGGG-------UCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 28566 0.66 0.319417
Target:  5'- gCCAUcGCggCGCGCAcgucGGCcaCCGGCaGCGUg -3'
miRNA:   3'- aGGUA-CGa-GCGCGU----CCG--GGUCG-CGCG- -5'
26506 5' -61.7 NC_005357.1 + 8238 0.66 0.319417
Target:  5'- gCCGUcagcaGCUUGCGCuucaagcGGCCCAG-GUGUu -3'
miRNA:   3'- aGGUA-----CGAGCGCGu------CCGGGUCgCGCG- -5'
26506 5' -61.7 NC_005357.1 + 24615 0.66 0.319417
Target:  5'- cCCGaggGUUcCGUGCAGGCggaauaCuGCGCGCg -3'
miRNA:   3'- aGGUa--CGA-GCGCGUCCGg-----GuCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 19003 0.66 0.319417
Target:  5'- aUCCcgGCcggCGuCGCAcugaCCGGCGCGCu -3'
miRNA:   3'- -AGGuaCGa--GC-GCGUccg-GGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 6693 0.66 0.311778
Target:  5'- gCCA---UCGUGCAGGCacaccuuguCCugGGCGCGCa -3'
miRNA:   3'- aGGUacgAGCGCGUCCG---------GG--UCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 13001 0.66 0.311778
Target:  5'- gCCGUuCUCGUaCAGGCCgcgCAGCGCa- -3'
miRNA:   3'- aGGUAcGAGCGcGUCCGG---GUCGCGcg -5'
26506 5' -61.7 NC_005357.1 + 1878 0.66 0.311778
Target:  5'- cCCGUgGC-CgGCGCuGGCCgGGUGgGCg -3'
miRNA:   3'- aGGUA-CGaG-CGCGuCCGGgUCGCgCG- -5'
26506 5' -61.7 NC_005357.1 + 19914 0.66 0.311778
Target:  5'- -gCGUGCUCGCuGCGGGgaugaUGGCGgGCa -3'
miRNA:   3'- agGUACGAGCG-CGUCCgg---GUCGCgCG- -5'
26506 5' -61.7 NC_005357.1 + 36674 0.66 0.304277
Target:  5'- gCC---CUgGCGCAcucgcuGCCCGGCGCGCu -3'
miRNA:   3'- aGGuacGAgCGCGUc-----CGGGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 23717 0.66 0.296917
Target:  5'- cCCA-GgUCGCGggcCAGuGCCUcgguGGCGCGCa -3'
miRNA:   3'- aGGUaCgAGCGC---GUC-CGGG----UCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 38019 0.66 0.296917
Target:  5'- aCCuacgacUGC-CGCacGCucaAGGCCCGGCGCGa -3'
miRNA:   3'- aGGu-----ACGaGCG--CG---UCCGGGUCGCGCg -5'
26506 5' -61.7 NC_005357.1 + 9081 0.66 0.295461
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26506 5' -61.7 NC_005357.1 + 9129 0.66 0.295461
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26506 5' -61.7 NC_005357.1 + 9177 0.66 0.295461
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26506 5' -61.7 NC_005357.1 + 8985 0.66 0.295461
Target:  5'- gCCGUGCcggauucgccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26506 5' -61.7 NC_005357.1 + 9033 0.66 0.295461
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26506 5' -61.7 NC_005357.1 + 8938 0.66 0.295461
Target:  5'- gCCGUGCcggauucgccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26506 5' -61.7 NC_005357.1 + 41331 0.66 0.292567
Target:  5'- -aCAUGC-CGCGCGacacGGCCaaggcaaucuaccGCGCGCg -3'
miRNA:   3'- agGUACGaGCGCGU----CCGGgu-----------CGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.