miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26506 5' -61.7 NC_005357.1 + 1048 0.66 0.289695
Target:  5'- gCCGUggcguauucGCUCGCGgAuuuccugugcGaCCCGGCGCGCg -3'
miRNA:   3'- aGGUA---------CGAGCGCgU----------CcGGGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 15850 0.66 0.289695
Target:  5'- gUCCGUG-UCGUGCuGGUgCCA-CGCGCc -3'
miRNA:   3'- -AGGUACgAGCGCGuCCG-GGUcGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 23756 0.66 0.289695
Target:  5'- gCCAUGCcggCGCcacCGGGCCgAuGCGcCGCg -3'
miRNA:   3'- aGGUACGa--GCGc--GUCCGGgU-CGC-GCG- -5'
26506 5' -61.7 NC_005357.1 + 35832 0.66 0.289695
Target:  5'- gCCAUGCUCuacgugGUGCcGGCCguGCuGgGCu -3'
miRNA:   3'- aGGUACGAG------CGCGuCCGGguCG-CgCG- -5'
26506 5' -61.7 NC_005357.1 + 21247 0.66 0.289695
Target:  5'- aCCAgcagcagGCcgCGCaGCAGGCcgcgcuguugaaCCAGgGCGCg -3'
miRNA:   3'- aGGUa------CGa-GCG-CGUCCG------------GGUCgCGCG- -5'
26506 5' -61.7 NC_005357.1 + 2824 0.66 0.289695
Target:  5'- gCCAggUGCUCGCGgcCAcGCgCAGCgGCGCc -3'
miRNA:   3'- aGGU--ACGAGCGC--GUcCGgGUCG-CGCG- -5'
26506 5' -61.7 NC_005357.1 + 8182 0.66 0.287555
Target:  5'- cCCGgaUGCugccggcgauuucaUCGCGCAcGGCCUcguAGuCGCGCu -3'
miRNA:   3'- aGGU--ACG--------------AGCGCGU-CCGGG---UC-GCGCG- -5'
26506 5' -61.7 NC_005357.1 + 37742 0.67 0.282612
Target:  5'- gCCAUuCUCGcCGCGcuaUCCGGCGCGCu -3'
miRNA:   3'- aGGUAcGAGC-GCGUcc-GGGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 17110 0.67 0.282612
Target:  5'- aUCCcgGCgacgagCGCcggugGCAGGgCCGGC-CGCa -3'
miRNA:   3'- -AGGuaCGa-----GCG-----CGUCCgGGUCGcGCG- -5'
26506 5' -61.7 NC_005357.1 + 7837 0.67 0.282612
Target:  5'- cCCAUGUUCaGCGCGauGGUgaGGCGgGCu -3'
miRNA:   3'- aGGUACGAG-CGCGU--CCGggUCGCgCG- -5'
26506 5' -61.7 NC_005357.1 + 17063 0.67 0.282612
Target:  5'- aUCCuucacCUCGCGCacgaAGGCgaagCCGGCGCGg -3'
miRNA:   3'- -AGGuac--GAGCGCG----UCCG----GGUCGCGCg -5'
26506 5' -61.7 NC_005357.1 + 28079 0.67 0.280513
Target:  5'- uUCCAgGacaccgCGaaccaGCAGGCCCggcaguucagccaaGGCGCGCg -3'
miRNA:   3'- -AGGUaCga----GCg----CGUCCGGG--------------UCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 34264 0.67 0.275666
Target:  5'- aUCCggGCgcaCGCGCAGGgaCgCAGCGC-Cg -3'
miRNA:   3'- -AGGuaCGa--GCGCGUCCg-G-GUCGCGcG- -5'
26506 5' -61.7 NC_005357.1 + 12289 0.67 0.275666
Target:  5'- gUCCGacGCg-GUGCAGGCCggCGGCGUGUu -3'
miRNA:   3'- -AGGUa-CGagCGCGUCCGG--GUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 28754 0.67 0.275666
Target:  5'- gUCCA-GCgcggUGCGCuu-CUCGGCGCGCa -3'
miRNA:   3'- -AGGUaCGa---GCGCGuccGGGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 5732 0.67 0.275666
Target:  5'- --gAUG-UCGCaCAGaucGCCCAGCGCGCc -3'
miRNA:   3'- aggUACgAGCGcGUC---CGGGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 42240 0.67 0.275666
Target:  5'- gCCcgGCagCGUGaCGGuGCCCAGCgacaccgggGCGCa -3'
miRNA:   3'- aGGuaCGa-GCGC-GUC-CGGGUCG---------CGCG- -5'
26506 5' -61.7 NC_005357.1 + 14998 0.67 0.275666
Target:  5'- gCC-UGCggccgccgggCGCGguGcGCCaGGCGCGCg -3'
miRNA:   3'- aGGuACGa---------GCGCguC-CGGgUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 27396 0.67 0.273609
Target:  5'- aUCCAUGUcgcucuuguagucgUCGCGC--GCCUGGCGCa- -3'
miRNA:   3'- -AGGUACG--------------AGCGCGucCGGGUCGCGcg -5'
26506 5' -61.7 NC_005357.1 + 18278 0.67 0.268858
Target:  5'- gCCGU-CgagGCGCuGGGCCaGGCGCGCa -3'
miRNA:   3'- aGGUAcGag-CGCG-UCCGGgUCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.