Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26509 | 5' | -59.5 | NC_005357.1 | + | 7352 | 0.66 | 0.473487 |
Target: 5'- gCGCGGCCucgaccucggcguCGuucguccagcGGCGGGCaccGCGGCGACCu -3' miRNA: 3'- -GCGCUGG-------------GC----------UCGUUCG---CGCUGCUGGc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 27827 | 0.66 | 0.426358 |
Target: 5'- gCGCGcuGCCCGcGguGGCGC--CGGCCGc -3' miRNA: 3'- -GCGC--UGGGCuCguUCGCGcuGCUGGC- -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 18725 | 0.66 | 0.435752 |
Target: 5'- cCGCGACCUGGGCGcuaccGGCcuguacGUGuccggccCGACCGa -3' miRNA: 3'- -GCGCUGGGCUCGU-----UCG------CGCu------GCUGGC- -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 34186 | 0.66 | 0.46463 |
Target: 5'- gGCcGCuuGAagcGCAAGCuGCuGACGGCCGc -3' miRNA: 3'- gCGcUGggCU---CGUUCG-CG-CUGCUGGC- -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 33793 | 0.66 | 0.473487 |
Target: 5'- gCGCGGCCUgGGGCGuuuccgaAGgGCGuacCGGCCa -3' miRNA: 3'- -GCGCUGGG-CUCGU-------UCgCGCu--GCUGGc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 16479 | 0.66 | 0.445264 |
Target: 5'- aCGaCGGCUacaaGGuCAAGCGCGGCGACa- -3' miRNA: 3'- -GC-GCUGGg---CUcGUUCGCGCUGCUGgc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 14204 | 0.67 | 0.390023 |
Target: 5'- -cCGACCCGcGCGuggucgucGGCGUGGcCGACCu -3' miRNA: 3'- gcGCUGGGCuCGU--------UCGCGCU-GCUGGc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 37649 | 0.67 | 0.417086 |
Target: 5'- gGCGugCUGGGCGcAGUGUgGGCGaacGCCGa -3' miRNA: 3'- gCGCugGGCUCGU-UCGCG-CUGC---UGGC- -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 33900 | 0.67 | 0.372631 |
Target: 5'- uGCGAuaCCUGGGCAAGUucGCcGGCGACa- -3' miRNA: 3'- gCGCU--GGGCUCGUUCG--CG-CUGCUGgc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 15390 | 0.67 | 0.417086 |
Target: 5'- cCGCGugC-GGGCcGGCGaagaugccgGACGACCGa -3' miRNA: 3'- -GCGCugGgCUCGuUCGCg--------CUGCUGGC- -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 30219 | 0.67 | 0.407938 |
Target: 5'- uGCGuCCCGAccagggGCAGGCaGCG-CgGGCCGg -3' miRNA: 3'- gCGCuGGGCU------CGUUCG-CGCuG-CUGGC- -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 21665 | 0.67 | 0.407938 |
Target: 5'- gCGCGA--UGAGuCGAGCGCGGCGcagcGCCu -3' miRNA: 3'- -GCGCUggGCUC-GUUCGCGCUGC----UGGc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 21947 | 0.67 | 0.398916 |
Target: 5'- --aGGCCCaacgGGGCAcaguGCGCGgaACGACCGa -3' miRNA: 3'- gcgCUGGG----CUCGUu---CGCGC--UGCUGGC- -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 37859 | 0.67 | 0.398916 |
Target: 5'- gGCG-CaCCGAGC-AGCGCcucGGCGACUu -3' miRNA: 3'- gCGCuG-GGCUCGuUCGCG---CUGCUGGc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 34051 | 0.67 | 0.398916 |
Target: 5'- gGCGAuuCUCGAagauuCGAGCGCGGCGGCg- -3' miRNA: 3'- gCGCU--GGGCUc----GUUCGCGCUGCUGgc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 34106 | 0.67 | 0.398916 |
Target: 5'- aCGCGcaacuuucCCCGAGC-AGCGCGcACcGCUGg -3' miRNA: 3'- -GCGCu-------GGGCUCGuUCGCGC-UGcUGGC- -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 40661 | 0.67 | 0.407938 |
Target: 5'- -uCGGCCCGAcGCGccaGGCGCaGGcCGGCCa -3' miRNA: 3'- gcGCUGGGCU-CGU---UCGCG-CU-GCUGGc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 28183 | 0.67 | 0.417086 |
Target: 5'- uGCccacGCCC-AGCAGGUGCGGCG-CCu -3' miRNA: 3'- gCGc---UGGGcUCGUUCGCGCUGCuGGc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 31315 | 0.67 | 0.417086 |
Target: 5'- gGUGGCCCG-GCuggaaucccAGGuCGCGGCGACa- -3' miRNA: 3'- gCGCUGGGCuCG---------UUC-GCGCUGCUGgc -5' |
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26509 | 5' | -59.5 | NC_005357.1 | + | 41030 | 0.67 | 0.417086 |
Target: 5'- gGCGGCCaUGAGUGAaaccguuguGCGCGugG-CCGc -3' miRNA: 3'- gCGCUGG-GCUCGUU---------CGCGCugCuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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