miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26509 5' -59.5 NC_005357.1 + 36894 0.71 0.23277
Target:  5'- gGCGACCUGGGCGgaaccugggcggccGGCGUGccuACGACUu -3'
miRNA:   3'- gCGCUGGGCUCGU--------------UCGCGC---UGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 32516 0.71 0.234562
Target:  5'- cCGCG-CCCGuGCAGGCugGUGAUG-CCGg -3'
miRNA:   3'- -GCGCuGGGCuCGUUCG--CGCUGCuGGC- -5'
26509 5' -59.5 NC_005357.1 + 11393 0.7 0.246801
Target:  5'- gGCGACCUGAuggGCcagggucuuGAGCaGCGGCGAgCCGg -3'
miRNA:   3'- gCGCUGGGCU---CG---------UUCG-CGCUGCU-GGC- -5'
26509 5' -59.5 NC_005357.1 + 26127 0.7 0.246801
Target:  5'- uCGCuuCCCGuGC--GCGaCGACGACCGg -3'
miRNA:   3'- -GCGcuGGGCuCGuuCGC-GCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 29764 0.7 0.246801
Target:  5'- aCGCG-CCUGcGCAugauGgGCGACGACCc -3'
miRNA:   3'- -GCGCuGGGCuCGUu---CgCGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 39609 0.7 0.253117
Target:  5'- gCGUGGCCgCGAGCAccuGGCcCGACGaAUCGa -3'
miRNA:   3'- -GCGCUGG-GCUCGU---UCGcGCUGC-UGGC- -5'
26509 5' -59.5 NC_005357.1 + 22085 0.7 0.259565
Target:  5'- gCGCGGCUCGAu--GGCGUGAaUGACCGu -3'
miRNA:   3'- -GCGCUGGGCUcguUCGCGCU-GCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 15709 0.7 0.265482
Target:  5'- gGCGuccGCCUGGGCAucgaacuGGCGCGA-GGCCa -3'
miRNA:   3'- gCGC---UGGGCUCGU-------UCGCGCUgCUGGc -5'
26509 5' -59.5 NC_005357.1 + 28673 0.7 0.266146
Target:  5'- gGCGGCCUc-GCcAGCGCGGCGcGCCa -3'
miRNA:   3'- gCGCUGGGcuCGuUCGCGCUGC-UGGc -5'
26509 5' -59.5 NC_005357.1 + 10091 0.7 0.272862
Target:  5'- aGCGACCUGGGCGGcgguuGuCGgGACG-CCGg -3'
miRNA:   3'- gCGCUGGGCUCGUU-----C-GCgCUGCuGGC- -5'
26509 5' -59.5 NC_005357.1 + 14728 0.7 0.272862
Target:  5'- gGCGAgCCGcuGCcGGCGCG-CGGCCu -3'
miRNA:   3'- gCGCUgGGCu-CGuUCGCGCuGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 35189 0.69 0.2867
Target:  5'- gGCGGCCgacaucgccgaGGGUGAGCGCGGCGcagaugcuGCCGu -3'
miRNA:   3'- gCGCUGGg----------CUCGUUCGCGCUGC--------UGGC- -5'
26509 5' -59.5 NC_005357.1 + 24447 0.69 0.293106
Target:  5'- gCGCGGCCUcGGCGAcauugacGC-CGACGACCu -3'
miRNA:   3'- -GCGCUGGGcUCGUU-------CGcGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 26430 0.69 0.301086
Target:  5'- gGCGACCUGucccuGC--GCGCGGCGcACCu -3'
miRNA:   3'- gCGCUGGGCu----CGuuCGCGCUGC-UGGc -5'
26509 5' -59.5 NC_005357.1 + 33232 0.69 0.308484
Target:  5'- cCGCGcCgCCGAGCAGGCcaacguCGACGGCg- -3'
miRNA:   3'- -GCGCuG-GGCUCGUUCGc-----GCUGCUGgc -5'
26509 5' -59.5 NC_005357.1 + 35942 0.69 0.308484
Target:  5'- gCGCGugaAUgCGGGCcuGCGCGGCGugCa -3'
miRNA:   3'- -GCGC---UGgGCUCGuuCGCGCUGCugGc -5'
26509 5' -59.5 NC_005357.1 + 14814 0.69 0.316021
Target:  5'- -cCGGCCCaucGuCAAGgGCGACGACCa -3'
miRNA:   3'- gcGCUGGGcu-C-GUUCgCGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 32678 0.69 0.316021
Target:  5'- aCGUGaaGCCCGAGCAGuucGC-CGACGugCu -3'
miRNA:   3'- -GCGC--UGGGCUCGUU---CGcGCUGCugGc -5'
26509 5' -59.5 NC_005357.1 + 33610 0.68 0.321379
Target:  5'- gGCuGGCCCGAcccaGCAgaucgguacugaccGGCGCGGcCGACCc -3'
miRNA:   3'- gCG-CUGGGCU----CGU--------------UCGCGCU-GCUGGc -5'
26509 5' -59.5 NC_005357.1 + 14597 0.68 0.323696
Target:  5'- gCGCGGCCggcgccaccgCGGGCAGcgcGCGCGAgGACg- -3'
miRNA:   3'- -GCGCUGG----------GCUCGUU---CGCGCUgCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.