miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26509 5' -59.5 NC_005357.1 + 20373 1.08 0.000414
Target:  5'- cCGCGACCCGAGCAAGCGCGACGACCGc -3'
miRNA:   3'- -GCGCUGGGCUCGUUCGCGCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 17761 0.8 0.053521
Target:  5'- aCGUGGCCCGcGGCGGGCGCGACaacACCa -3'
miRNA:   3'- -GCGCUGGGC-UCGUUCGCGCUGc--UGGc -5'
26509 5' -59.5 NC_005357.1 + 13646 0.76 0.094066
Target:  5'- gGCaACCaGGGCAAGCGCGACG-CCGu -3'
miRNA:   3'- gCGcUGGgCUCGUUCGCGCUGCuGGC- -5'
26509 5' -59.5 NC_005357.1 + 26557 0.76 0.099171
Target:  5'- aCGUG-CCCGAGCAacagaucGGCGCGugGcACCa -3'
miRNA:   3'- -GCGCuGGGCUCGU-------UCGCGCugC-UGGc -5'
26509 5' -59.5 NC_005357.1 + 2740 0.75 0.107766
Target:  5'- gCGCGGCCCG-GCGcugcucgGGCGUGcCGACCa -3'
miRNA:   3'- -GCGCUGGGCuCGU-------UCGCGCuGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 9313 0.75 0.114195
Target:  5'- gGCGACCUGGcggcGCAcgucGGCGCGGCGGgCGg -3'
miRNA:   3'- gCGCUGGGCU----CGU----UCGCGCUGCUgGC- -5'
26509 5' -59.5 NC_005357.1 + 8733 0.75 0.120648
Target:  5'- uGUG-CCCG-GCGGGCGCGGCGcuACCGu -3'
miRNA:   3'- gCGCuGGGCuCGUUCGCGCUGC--UGGC- -5'
26509 5' -59.5 NC_005357.1 + 12873 0.75 0.120648
Target:  5'- aCGCGAuacCCCGAGCAcGGCGUGgguguccucuGCGGCCa -3'
miRNA:   3'- -GCGCU---GGGCUCGU-UCGCGC----------UGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 41744 0.74 0.141709
Target:  5'- gGCGGCCCG-GCcGGCGCcgccguaGGCGGCCu -3'
miRNA:   3'- gCGCUGGGCuCGuUCGCG-------CUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 34371 0.74 0.142093
Target:  5'- aGCGACCUGGGCGcGCGUcaugGACGGCgGc -3'
miRNA:   3'- gCGCUGGGCUCGUuCGCG----CUGCUGgC- -5'
26509 5' -59.5 NC_005357.1 + 10064 0.74 0.145991
Target:  5'- gGCGGCCgGGGCcucgGCGGCGACCGc -3'
miRNA:   3'- gCGCUGGgCUCGuucgCGCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 30853 0.73 0.149985
Target:  5'- gGCGGCCCuGGGCGgcauGGCuuCGAUGACCGg -3'
miRNA:   3'- gCGCUGGG-CUCGU----UCGc-GCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 9368 0.73 0.158274
Target:  5'- gCGCGACCCGAugAAGCGC-ACGACa- -3'
miRNA:   3'- -GCGCUGGGCUcgUUCGCGcUGCUGgc -5'
26509 5' -59.5 NC_005357.1 + 16616 0.72 0.174705
Target:  5'- gGCGGCCCGGuGCAgaucaacgauaccgAGCGCGccgcgcgcaucGCGGCCa -3'
miRNA:   3'- gCGCUGGGCU-CGU--------------UCGCGC-----------UGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 24296 0.72 0.176101
Target:  5'- gCGCGAgCCGGGCGacaAGUuCGACGuACCGg -3'
miRNA:   3'- -GCGCUgGGCUCGU---UCGcGCUGC-UGGC- -5'
26509 5' -59.5 NC_005357.1 + 12969 0.72 0.18518
Target:  5'- gCGCGcucgucgccugguGCCagGAGCAccugGGCGCGACGugCGa -3'
miRNA:   3'- -GCGC-------------UGGg-CUCGU----UCGCGCUGCugGC- -5'
26509 5' -59.5 NC_005357.1 + 41894 0.71 0.211065
Target:  5'- aGCGGCCCGcGCAcguccgagguuucGGCcaGCGAUGGCCc -3'
miRNA:   3'- gCGCUGGGCuCGU-------------UCG--CGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 10936 0.71 0.211613
Target:  5'- uGCagGGCCuCGGGCAGuuGCGCGGCGACa- -3'
miRNA:   3'- gCG--CUGG-GCUCGUU--CGCGCUGCUGgc -5'
26509 5' -59.5 NC_005357.1 + 15001 0.71 0.220552
Target:  5'- uGCGGCcgCCGGGCGcggugcgccaggcGCGCGACGACUa -3'
miRNA:   3'- gCGCUG--GGCUCGUu------------CGCGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 27161 0.71 0.228636
Target:  5'- gGCGACagCGGGCAAcuguuuGUGCGGCaGGCCGa -3'
miRNA:   3'- gCGCUGg-GCUCGUU------CGCGCUG-CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.