miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26509 5' -59.5 NC_005357.1 + 726 0.66 0.454892
Target:  5'- -aCGGCCaaguCGAGCGccuGGCG-GAUGACCGa -3'
miRNA:   3'- gcGCUGG----GCUCGU---UCGCgCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 1078 0.67 0.372631
Target:  5'- uGCGACCCG-GCGcGCGUacuucauguuGGCGGCgGu -3'
miRNA:   3'- gCGCUGGGCuCGUuCGCG----------CUGCUGgC- -5'
26509 5' -59.5 NC_005357.1 + 1316 0.66 0.426358
Target:  5'- gGCGACggccaccaggCCGA-CAAGCGCGAgGaaGCCGu -3'
miRNA:   3'- gCGCUG----------GGCUcGUUCGCGCUgC--UGGC- -5'
26509 5' -59.5 NC_005357.1 + 2740 0.75 0.107766
Target:  5'- gCGCGGCCCG-GCGcugcucgGGCGUGcCGACCa -3'
miRNA:   3'- -GCGCUGGGCuCGU-------UCGCGCuGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 2910 0.66 0.445264
Target:  5'- gCGCGcCCCGAuGUucGCGUucgaguucGACGGCCc -3'
miRNA:   3'- -GCGCuGGGCU-CGuuCGCG--------CUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 3517 0.66 0.46463
Target:  5'- gCGCGAgaaCCCGAGa----GCGACGuGCCGu -3'
miRNA:   3'- -GCGCU---GGGCUCguucgCGCUGC-UGGC- -5'
26509 5' -59.5 NC_005357.1 + 4875 0.66 0.46463
Target:  5'- uCGUuGCCC-AGCGcGGCGaCGGCGGCCu -3'
miRNA:   3'- -GCGcUGGGcUCGU-UCGC-GCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 7352 0.66 0.473487
Target:  5'- gCGCGGCCucgaccucggcguCGuucguccagcGGCGGGCaccGCGGCGACCu -3'
miRNA:   3'- -GCGCUGG-------------GC----------UCGUUCG---CGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 8170 0.67 0.407938
Target:  5'- uGCGGCCCaGGaAGGCGCuGGCGuCCu -3'
miRNA:   3'- gCGCUGGGcUCgUUCGCG-CUGCuGGc -5'
26509 5' -59.5 NC_005357.1 + 8733 0.75 0.120648
Target:  5'- uGUG-CCCG-GCGGGCGCGGCGcuACCGu -3'
miRNA:   3'- gCGCuGGGCuCGUUCGCGCUGC--UGGC- -5'
26509 5' -59.5 NC_005357.1 + 8842 0.67 0.381261
Target:  5'- cCGCaACgCGGGCcAGCGCGuuGGCCu -3'
miRNA:   3'- -GCGcUGgGCUCGuUCGCGCugCUGGc -5'
26509 5' -59.5 NC_005357.1 + 9313 0.75 0.114195
Target:  5'- gGCGACCUGGcggcGCAcgucGGCGCGGCGGgCGg -3'
miRNA:   3'- gCGCUGGGCU----CGU----UCGCGCUGCUgGC- -5'
26509 5' -59.5 NC_005357.1 + 9368 0.73 0.158274
Target:  5'- gCGCGACCCGAugAAGCGC-ACGACa- -3'
miRNA:   3'- -GCGCUGGGCUcgUUCGCGcUGCUGgc -5'
26509 5' -59.5 NC_005357.1 + 10064 0.74 0.145991
Target:  5'- gGCGGCCgGGGCcucgGCGGCGACCGc -3'
miRNA:   3'- gCGCUGGgCUCGuucgCGCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 10091 0.7 0.272862
Target:  5'- aGCGACCUGGGCGGcgguuGuCGgGACG-CCGg -3'
miRNA:   3'- gCGCUGGGCUCGUU-----C-GCgCUGCuGGC- -5'
26509 5' -59.5 NC_005357.1 + 10936 0.71 0.211613
Target:  5'- uGCagGGCCuCGGGCAGuuGCGCGGCGACa- -3'
miRNA:   3'- gCG--CUGG-GCUCGUU--CGCGCUGCUGgc -5'
26509 5' -59.5 NC_005357.1 + 11393 0.7 0.246801
Target:  5'- gGCGACCUGAuggGCcagggucuuGAGCaGCGGCGAgCCGg -3'
miRNA:   3'- gCGCUGGGCU---CG---------UUCG-CGCUGCU-GGC- -5'
26509 5' -59.5 NC_005357.1 + 11945 0.66 0.474476
Target:  5'- uCGaCGACUUucAGCAGGUgacGCGAUGACCGc -3'
miRNA:   3'- -GC-GCUGGGc-UCGUUCG---CGCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 12873 0.75 0.120648
Target:  5'- aCGCGAuacCCCGAGCAcGGCGUGgguguccucuGCGGCCa -3'
miRNA:   3'- -GCGCU---GGGCUCGU-UCGCGC----------UGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 12969 0.72 0.18518
Target:  5'- gCGCGcucgucgccugguGCCagGAGCAccugGGCGCGACGugCGa -3'
miRNA:   3'- -GCGC-------------UGGg-CUCGU----UCGCGCUGCugGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.