miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26509 5' -59.5 NC_005357.1 + 42233 0.66 0.46463
Target:  5'- cCGUGucGCCCG-GC-AGCGUGACGguGCCc -3'
miRNA:   3'- -GCGC--UGGGCuCGuUCGCGCUGC--UGGc -5'
26509 5' -59.5 NC_005357.1 + 41894 0.71 0.211065
Target:  5'- aGCGGCCCGcGCAcguccgagguuucGGCcaGCGAUGGCCc -3'
miRNA:   3'- gCGCUGGGCuCGU-------------UCG--CGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 41744 0.74 0.141709
Target:  5'- gGCGGCCCG-GCcGGCGCcgccguaGGCGGCCu -3'
miRNA:   3'- gCGCUGGGCuCGuUCGCG-------CUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 41619 0.66 0.445264
Target:  5'- -uCGGCaaGGGCuGGGCGCGGCGcgucGCCGg -3'
miRNA:   3'- gcGCUGggCUCG-UUCGCGCUGC----UGGC- -5'
26509 5' -59.5 NC_005357.1 + 41477 0.66 0.426358
Target:  5'- aCGUGGCUCGAcacGCAgAGCGUGGagaauuCGACCa -3'
miRNA:   3'- -GCGCUGGGCU---CGU-UCGCGCU------GCUGGc -5'
26509 5' -59.5 NC_005357.1 + 41251 0.66 0.471511
Target:  5'- gGcCGACCCcGGCGgcgagacuauguggGGCGUGACcGCCGc -3'
miRNA:   3'- gC-GCUGGGcUCGU--------------UCGCGCUGcUGGC- -5'
26509 5' -59.5 NC_005357.1 + 41030 0.67 0.417086
Target:  5'- gGCGGCCaUGAGUGAaaccguuguGCGCGugG-CCGc -3'
miRNA:   3'- gCGCUGG-GCUCGUU---------CGCGCugCuGGC- -5'
26509 5' -59.5 NC_005357.1 + 40661 0.67 0.407938
Target:  5'- -uCGGCCCGAcGCGccaGGCGCaGGcCGGCCa -3'
miRNA:   3'- gcGCUGGGCU-CGU---UCGCG-CU-GCUGGc -5'
26509 5' -59.5 NC_005357.1 + 40193 0.66 0.46463
Target:  5'- gCGCGGCCaCGcGCcgccugcuGCGCGugGugCu -3'
miRNA:   3'- -GCGCUGG-GCuCGuu------CGCGCugCugGc -5'
26509 5' -59.5 NC_005357.1 + 39609 0.7 0.253117
Target:  5'- gCGUGGCCgCGAGCAccuGGCcCGACGaAUCGa -3'
miRNA:   3'- -GCGCUGG-GCUCGU---UCGcGCUGC-UGGC- -5'
26509 5' -59.5 NC_005357.1 + 39486 0.67 0.372631
Target:  5'- uCGaCGugCCGcGCGAcGCgGUGugGGCCGg -3'
miRNA:   3'- -GC-GCugGGCuCGUU-CG-CGCugCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 37859 0.67 0.398916
Target:  5'- gGCG-CaCCGAGC-AGCGCcucGGCGACUu -3'
miRNA:   3'- gCGCuG-GGCUCGuUCGCG---CUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 37649 0.67 0.417086
Target:  5'- gGCGugCUGGGCGcAGUGUgGGCGaacGCCGa -3'
miRNA:   3'- gCGCugGGCUCGU-UCGCG-CUGC---UGGC- -5'
26509 5' -59.5 NC_005357.1 + 37048 0.66 0.463651
Target:  5'- gCGCGcaccagugacauaACCCuGGGCGcGGUGCaGGCGGCCa -3'
miRNA:   3'- -GCGC-------------UGGG-CUCGU-UCGCG-CUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 36894 0.71 0.23277
Target:  5'- gGCGACCUGGGCGgaaccugggcggccGGCGUGccuACGACUu -3'
miRNA:   3'- gCGCUGGGCUCGU--------------UCGCGC---UGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 36028 0.68 0.355774
Target:  5'- uCGaCGACaucaCCGAGgGcGcCGCGGCGGCCGa -3'
miRNA:   3'- -GC-GCUG----GGCUCgUuC-GCGCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 35942 0.69 0.308484
Target:  5'- gCGCGugaAUgCGGGCcuGCGCGGCGugCa -3'
miRNA:   3'- -GCGC---UGgGCUCGuuCGCGCUGCugGc -5'
26509 5' -59.5 NC_005357.1 + 35892 0.68 0.355774
Target:  5'- gGCGAUUCGGGCGA---CGACGACCc -3'
miRNA:   3'- gCGCUGGGCUCGUUcgcGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 35189 0.69 0.2867
Target:  5'- gGCGGCCgacaucgccgaGGGUGAGCGCGGCGcagaugcuGCCGu -3'
miRNA:   3'- gCGCUGGg----------CUCGUUCGCGCUGC--------UGGC- -5'
26509 5' -59.5 NC_005357.1 + 34739 0.66 0.46463
Target:  5'- aGcCGGCcgCCGAGguCAAGCcCGACGACCu -3'
miRNA:   3'- gC-GCUG--GGCUC--GUUCGcGCUGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.