Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2651 | 5' | -59.8 | NC_001491.2 | + | 1365 | 0.66 | 0.743147 |
Target: 5'- gCAGGCacaGCUCCGUgGCCCCCAUgUGCa -3' miRNA: 3'- -GUUUG---UGGGGUGgCGGGGGUAgGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 1557 | 0.72 | 0.427163 |
Target: 5'- cCGAGgGCUCCACgGCCCCagcgCCGCg -3' miRNA: 3'- -GUUUgUGGGGUGgCGGGGgua-GGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 3053 | 0.72 | 0.427163 |
Target: 5'- ----aGCCCCGgCGCCUCCG-CCGCUc -3' miRNA: 3'- guuugUGGGGUgGCGGGGGUaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 3600 | 0.69 | 0.580163 |
Target: 5'- gCGGACGCCCCGCCGCggaggcgcaggagggCCUCGaagaCgGCCu -3' miRNA: 3'- -GUUUGUGGGGUGGCG---------------GGGGUa---GgCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 4009 | 0.66 | 0.743147 |
Target: 5'- -cAGgGCCCagaGCgCGUUCCCggCCGCCa -3' miRNA: 3'- guUUgUGGGg--UG-GCGGGGGuaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 4474 | 0.66 | 0.780066 |
Target: 5'- --uGCugCugCCGCCGCCCCgGUa-GCCu -3' miRNA: 3'- guuUGugG--GGUGGCGGGGgUAggCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 5223 | 0.66 | 0.7609 |
Target: 5'- --cGCGuCCCCACCGCCgggugaugaggagCCCGUggcCCGgCg -3' miRNA: 3'- guuUGU-GGGGUGGCGG-------------GGGUA---GGCgG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 5900 | 0.66 | 0.780066 |
Target: 5'- uCAGAUAUCCaggcuuCCGCgCCgAgcUCCGCCg -3' miRNA: 3'- -GUUUGUGGGgu----GGCGgGGgU--AGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 5988 | 0.66 | 0.743147 |
Target: 5'- gUAAGUAuCCCCACCGCgCUUCGaCCGCUa -3' miRNA: 3'- -GUUUGU-GGGGUGGCG-GGGGUaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 7291 | 0.66 | 0.771003 |
Target: 5'- --cACACCCC----CCCCCAUgccCCGCCc -3' miRNA: 3'- guuUGUGGGGuggcGGGGGUA---GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 7414 | 0.67 | 0.675337 |
Target: 5'- aAAAUACCUaaagCGCCCCCAUCCa-- -3' miRNA: 3'- gUUUGUGGGgug-GCGGGGGUAGGcgg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 8482 | 0.73 | 0.385368 |
Target: 5'- gGGACGCCguCCACCaGCCCCCucaucCCGUCc -3' miRNA: 3'- gUUUGUGG--GGUGG-CGGGGGua---GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 8525 | 0.67 | 0.724105 |
Target: 5'- --cGC-CCCCGgcgggggacCCGUCCCCAcgcUCCaGCCa -3' miRNA: 3'- guuUGuGGGGU---------GGCGGGGGU---AGG-CGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 8683 | 0.75 | 0.277121 |
Target: 5'- --uGCGCCCCGCCGUggcgCCCCGaugugaaCCGCCu -3' miRNA: 3'- guuUGUGGGGUGGCG----GGGGUa------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 10494 | 0.67 | 0.68519 |
Target: 5'- cCGAGCuguUCCC-CCGCCaCgCAgCCGCCg -3' miRNA: 3'- -GUUUGu--GGGGuGGCGG-GgGUaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 10548 | 0.68 | 0.65554 |
Target: 5'- gCAAGCuCCCUcuccaGCUGCCCUCGgcccaucggaCCGCCa -3' miRNA: 3'- -GUUUGuGGGG-----UGGCGGGGGUa---------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 12585 | 0.67 | 0.704763 |
Target: 5'- --cGCAUCCCcCC-CCUCCGacggCCGCCg -3' miRNA: 3'- guuUGUGGGGuGGcGGGGGUa---GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 12853 | 0.67 | 0.695001 |
Target: 5'- gUAAGCGCCaCgCGCCGCCgCC-UgUGCCu -3' miRNA: 3'- -GUUUGUGG-G-GUGGCGGgGGuAgGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 24592 | 0.67 | 0.704763 |
Target: 5'- ----gACCCCGCgCGCCUUCGggaaauucCCGCCc -3' miRNA: 3'- guuugUGGGGUG-GCGGGGGUa-------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 24726 | 0.7 | 0.541117 |
Target: 5'- -cGACGCCgCC-CCGCCCCgGggacccgcgggcgcCCGCCg -3' miRNA: 3'- guUUGUGG-GGuGGCGGGGgUa-------------GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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