miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 100554 1.11 0.000921
Target:  5'- cCAAACACCCCACCGCCCCCAUCCGCCg -3'
miRNA:   3'- -GUUUGUGGGGUGGCGGGGGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 25087 0.78 0.176499
Target:  5'- ---cCGCCCCACCucgucuugGCCCCCAccUUCGCCg -3'
miRNA:   3'- guuuGUGGGGUGG--------CGGGGGU--AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 60811 0.76 0.235536
Target:  5'- ----gACCUCACCGCCUCC-UCCGUCg -3'
miRNA:   3'- guuugUGGGGUGGCGGGGGuAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 99872 0.76 0.246854
Target:  5'- uGGGCAggUCCCGCCGCCaCCCAcgCCGCa -3'
miRNA:   3'- gUUUGU--GGGGUGGCGG-GGGUa-GGCGg -5'
2651 5' -59.8 NC_001491.2 + 113481 0.76 0.25862
Target:  5'- uGAGCGCCCC-CCG-CCUUAUUCGCCg -3'
miRNA:   3'- gUUUGUGGGGuGGCgGGGGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 36139 0.76 0.25862
Target:  5'- gCAGACuCCgCCuagacucCCGCCUCCAUCCGCUg -3'
miRNA:   3'- -GUUUGuGG-GGu------GGCGGGGGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 35944 0.76 0.261027
Target:  5'- uGAGCACCCCGgcCCGagCCCCGgcguggcccaggcccUCCGCCg -3'
miRNA:   3'- gUUUGUGGGGU--GGCg-GGGGU---------------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 8683 0.75 0.277121
Target:  5'- --uGCGCCCCGCCGUggcgCCCCGaugugaaCCGCCu -3'
miRNA:   3'- guuUGUGGGGUGGCG----GGGGUa------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 116486 0.75 0.277121
Target:  5'- aCAAACAUcuggUCCACCGCCUCCAuuucccugUCCGUCc -3'
miRNA:   3'- -GUUUGUG----GGGUGGCGGGGGU--------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 30856 0.75 0.283519
Target:  5'- --uACACgCCCACCGCCCaUCAUCaacgGCCa -3'
miRNA:   3'- guuUGUG-GGGUGGCGGG-GGUAGg---CGG- -5'
2651 5' -59.8 NC_001491.2 + 33439 0.75 0.283519
Target:  5'- -cGAgGCCCCGgCGCCCUCGgUCCGCg -3'
miRNA:   3'- guUUgUGGGGUgGCGGGGGU-AGGCGg -5'
2651 5' -59.8 NC_001491.2 + 90090 0.74 0.31726
Target:  5'- uCGAGgGCCCUgagaGCCGCUUCCG-CCGCCg -3'
miRNA:   3'- -GUUUgUGGGG----UGGCGGGGGUaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33620 0.74 0.331579
Target:  5'- gAGGCcCUCCugCGCCUCCGcggcggggcgUCCGCCg -3'
miRNA:   3'- gUUUGuGGGGugGCGGGGGU----------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 42862 0.73 0.369424
Target:  5'- aCGGACACCCU-UCGCCCCUGUCuCGUg -3'
miRNA:   3'- -GUUUGUGGGGuGGCGGGGGUAG-GCGg -5'
2651 5' -59.8 NC_001491.2 + 8482 0.73 0.385368
Target:  5'- gGGACGCCguCCACCaGCCCCCucaucCCGUCc -3'
miRNA:   3'- gUUUGUGG--GGUGG-CGGGGGua---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 120210 0.73 0.385368
Target:  5'- cCAAAUGCCUCGCCauaCCCCCG-CCGCa -3'
miRNA:   3'- -GUUUGUGGGGUGGc--GGGGGUaGGCGg -5'
2651 5' -59.8 NC_001491.2 + 27244 0.72 0.410121
Target:  5'- --cGCGCCCgcccCCGUCCCCGUCC-CCg -3'
miRNA:   3'- guuUGUGGGgu--GGCGGGGGUAGGcGG- -5'
2651 5' -59.8 NC_001491.2 + 35776 0.72 0.410121
Target:  5'- --uGCugCCCAUCaccgagGCUCCCcgCCGCCg -3'
miRNA:   3'- guuUGugGGGUGG------CGGGGGuaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 1557 0.72 0.427163
Target:  5'- cCGAGgGCUCCACgGCCCCagcgCCGCg -3'
miRNA:   3'- -GUUUgUGGGGUGgCGGGGgua-GGCGg -5'
2651 5' -59.8 NC_001491.2 + 3053 0.72 0.427163
Target:  5'- ----aGCCCCGgCGCCUCCG-CCGCUc -3'
miRNA:   3'- guuugUGGGGUgGCGGGGGUaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.