miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 1365 0.66 0.743147
Target:  5'- gCAGGCacaGCUCCGUgGCCCCCAUgUGCa -3'
miRNA:   3'- -GUUUG---UGGGGUGgCGGGGGUAgGCGg -5'
2651 5' -59.8 NC_001491.2 + 1557 0.72 0.427163
Target:  5'- cCGAGgGCUCCACgGCCCCagcgCCGCg -3'
miRNA:   3'- -GUUUgUGGGGUGgCGGGGgua-GGCGg -5'
2651 5' -59.8 NC_001491.2 + 3053 0.72 0.427163
Target:  5'- ----aGCCCCGgCGCCUCCG-CCGCUc -3'
miRNA:   3'- guuugUGGGGUgGCGGGGGUaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 3600 0.69 0.580163
Target:  5'- gCGGACGCCCCGCCGCggaggcgcaggagggCCUCGaagaCgGCCu -3'
miRNA:   3'- -GUUUGUGGGGUGGCG---------------GGGGUa---GgCGG- -5'
2651 5' -59.8 NC_001491.2 + 4009 0.66 0.743147
Target:  5'- -cAGgGCCCagaGCgCGUUCCCggCCGCCa -3'
miRNA:   3'- guUUgUGGGg--UG-GCGGGGGuaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 4474 0.66 0.780066
Target:  5'- --uGCugCugCCGCCGCCCCgGUa-GCCu -3'
miRNA:   3'- guuUGugG--GGUGGCGGGGgUAggCGG- -5'
2651 5' -59.8 NC_001491.2 + 5223 0.66 0.7609
Target:  5'- --cGCGuCCCCACCGCCgggugaugaggagCCCGUggcCCGgCg -3'
miRNA:   3'- guuUGU-GGGGUGGCGG-------------GGGUA---GGCgG- -5'
2651 5' -59.8 NC_001491.2 + 5900 0.66 0.780066
Target:  5'- uCAGAUAUCCaggcuuCCGCgCCgAgcUCCGCCg -3'
miRNA:   3'- -GUUUGUGGGgu----GGCGgGGgU--AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 5988 0.66 0.743147
Target:  5'- gUAAGUAuCCCCACCGCgCUUCGaCCGCUa -3'
miRNA:   3'- -GUUUGU-GGGGUGGCG-GGGGUaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 7291 0.66 0.771003
Target:  5'- --cACACCCC----CCCCCAUgccCCGCCc -3'
miRNA:   3'- guuUGUGGGGuggcGGGGGUA---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 7414 0.67 0.675337
Target:  5'- aAAAUACCUaaagCGCCCCCAUCCa-- -3'
miRNA:   3'- gUUUGUGGGgug-GCGGGGGUAGGcgg -5'
2651 5' -59.8 NC_001491.2 + 8482 0.73 0.385368
Target:  5'- gGGACGCCguCCACCaGCCCCCucaucCCGUCc -3'
miRNA:   3'- gUUUGUGG--GGUGG-CGGGGGua---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 8525 0.67 0.724105
Target:  5'- --cGC-CCCCGgcgggggacCCGUCCCCAcgcUCCaGCCa -3'
miRNA:   3'- guuUGuGGGGU---------GGCGGGGGU---AGG-CGG- -5'
2651 5' -59.8 NC_001491.2 + 8683 0.75 0.277121
Target:  5'- --uGCGCCCCGCCGUggcgCCCCGaugugaaCCGCCu -3'
miRNA:   3'- guuUGUGGGGUGGCG----GGGGUa------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 10494 0.67 0.68519
Target:  5'- cCGAGCuguUCCC-CCGCCaCgCAgCCGCCg -3'
miRNA:   3'- -GUUUGu--GGGGuGGCGG-GgGUaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 10548 0.68 0.65554
Target:  5'- gCAAGCuCCCUcuccaGCUGCCCUCGgcccaucggaCCGCCa -3'
miRNA:   3'- -GUUUGuGGGG-----UGGCGGGGGUa---------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 12585 0.67 0.704763
Target:  5'- --cGCAUCCCcCC-CCUCCGacggCCGCCg -3'
miRNA:   3'- guuUGUGGGGuGGcGGGGGUa---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 12853 0.67 0.695001
Target:  5'- gUAAGCGCCaCgCGCCGCCgCC-UgUGCCu -3'
miRNA:   3'- -GUUUGUGG-G-GUGGCGGgGGuAgGCGG- -5'
2651 5' -59.8 NC_001491.2 + 24592 0.67 0.704763
Target:  5'- ----gACCCCGCgCGCCUUCGggaaauucCCGCCc -3'
miRNA:   3'- guuugUGGGGUG-GCGGGGGUa-------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 24726 0.7 0.541117
Target:  5'- -cGACGCCgCC-CCGCCCCgGggacccgcgggcgcCCGCCg -3'
miRNA:   3'- guUUGUGG-GGuGGCGGGGgUa-------------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.