miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 25022 0.67 0.724105
Target:  5'- -uGACAgCCgCCACCGCCggcaCCGaggucuUCCGCUg -3'
miRNA:   3'- guUUGU-GG-GGUGGCGGg---GGU------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 25087 0.78 0.176499
Target:  5'- ---cCGCCCCACCucgucuugGCCCCCAccUUCGCCg -3'
miRNA:   3'- guuuGUGGGGUGG--------CGGGGGU--AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 26007 0.68 0.624735
Target:  5'- cCAGGCGgcguuucCCCUACCGCucucCCCCGcUCgGCCu -3'
miRNA:   3'- -GUUUGU-------GGGGUGGCG----GGGGU-AGgCGG- -5'
2651 5' -59.8 NC_001491.2 + 27104 0.7 0.527651
Target:  5'- gCGGGCGgCCCggcGCCGCUCCggagcgCGUCCGCUg -3'
miRNA:   3'- -GUUUGUgGGG---UGGCGGGG------GUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 27244 0.72 0.410121
Target:  5'- --cGCGCCCgcccCCGUCCCCGUCC-CCg -3'
miRNA:   3'- guuUGUGGGgu--GGCGGGGGUAGGcGG- -5'
2651 5' -59.8 NC_001491.2 + 28571 0.71 0.444617
Target:  5'- aGAACGCCCC-UgGCCCCCGg--GCCa -3'
miRNA:   3'- gUUUGUGGGGuGgCGGGGGUaggCGG- -5'
2651 5' -59.8 NC_001491.2 + 30856 0.75 0.283519
Target:  5'- --uACACgCCCACCGCCCaUCAUCaacgGCCa -3'
miRNA:   3'- guuUGUG-GGGUGGCGGG-GGUAGg---CGG- -5'
2651 5' -59.8 NC_001491.2 + 31382 0.67 0.724105
Target:  5'- gAGAgGCCCagGCCGCCCgCGUUC-CCu -3'
miRNA:   3'- gUUUgUGGGg-UGGCGGGgGUAGGcGG- -5'
2651 5' -59.8 NC_001491.2 + 31486 0.68 0.615792
Target:  5'- cCGAGCG-CCCGCCGCggaaCCCCGccaccggccacCCGCCa -3'
miRNA:   3'- -GUUUGUgGGGUGGCG----GGGGUa----------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 31716 0.66 0.733668
Target:  5'- ---cCAgCCCGCCGCgCCCGaCCuGCUg -3'
miRNA:   3'- guuuGUgGGGUGGCGgGGGUaGG-CGG- -5'
2651 5' -59.8 NC_001491.2 + 31770 0.67 0.682238
Target:  5'- -cGACGCUCCGCUcuccaCCCCGgcgguggucaucccUCCGCCg -3'
miRNA:   3'- guUUGUGGGGUGGcg---GGGGU--------------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 32289 0.68 0.625729
Target:  5'- -cGGCACUCgcagaaCGCCGCgaaaaCCCCGUCgGCCg -3'
miRNA:   3'- guUUGUGGG------GUGGCG-----GGGGUAGgCGG- -5'
2651 5' -59.8 NC_001491.2 + 32353 0.66 0.752535
Target:  5'- gGGAuCGCCCgGCCGCuggggccgccaCCCCGaagagCUGCCg -3'
miRNA:   3'- gUUU-GUGGGgUGGCG-----------GGGGUa----GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 32429 0.68 0.615792
Target:  5'- ----gGCUCCAgcuucggcgcCCGCUCCCAgCCGCCc -3'
miRNA:   3'- guuugUGGGGU----------GGCGGGGGUaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 32544 0.72 0.43584
Target:  5'- gAGAgGCCCgaACCGCCCgCGgggauggcuucUCCGCCg -3'
miRNA:   3'- gUUUgUGGGg-UGGCGGGgGU-----------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33188 0.69 0.605867
Target:  5'- ----aACCCC-CUGCCCCaCAUCggggaCGCCa -3'
miRNA:   3'- guuugUGGGGuGGCGGGG-GUAG-----GCGG- -5'
2651 5' -59.8 NC_001491.2 + 33246 0.66 0.780066
Target:  5'- --cACACgCgGCCGCCUCgGUggccaugagCCGCCg -3'
miRNA:   3'- guuUGUGgGgUGGCGGGGgUA---------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33368 0.66 0.752535
Target:  5'- cCGGACucaCUCGCCGCCguggccggcuaCCCGgcccaggCCGCCg -3'
miRNA:   3'- -GUUUGug-GGGUGGCGG-----------GGGUa------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 33439 0.75 0.283519
Target:  5'- -cGAgGCCCCGgCGCCCUCGgUCCGCg -3'
miRNA:   3'- guUUgUGGGGUgGCGGGGGU-AGGCGg -5'
2651 5' -59.8 NC_001491.2 + 33536 0.67 0.675337
Target:  5'- cCGGGgACCagGgCGCCCaggCCGUCCGCCu -3'
miRNA:   3'- -GUUUgUGGggUgGCGGG---GGUAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.