Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26516 | 3' | -53.1 | NC_005357.1 | + | 37935 | 0.66 | 0.794129 |
Target: 5'- cGCCC-GUG-AGAUUAccguCGAUACCGAc -3' miRNA: 3'- -CGGGcCACgUCUAGUu---GCUAUGGCUc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 38344 | 0.66 | 0.784037 |
Target: 5'- aCCaCGGcGCAGAUCAACGAauacaGCCu-- -3' miRNA: 3'- cGG-GCCaCGUCUAGUUGCUa----UGGcuc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 3741 | 0.66 | 0.773778 |
Target: 5'- -gCCGGUGguGggCAcguCGGUGCCGc- -3' miRNA: 3'- cgGGCCACguCuaGUu--GCUAUGGCuc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 34878 | 0.66 | 0.763365 |
Target: 5'- -gCCGGUggcgccGCGGAUCGagcACGccGCCGAGc -3' miRNA: 3'- cgGGCCA------CGUCUAGU---UGCuaUGGCUC- -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 22990 | 0.66 | 0.749616 |
Target: 5'- aGCCCGagaagucccgcaccGUGCAGGUCAaggacagcaugGgGAUGCUGGa -3' miRNA: 3'- -CGGGC--------------CACGUCUAGU-----------UgCUAUGGCUc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 632 | 0.67 | 0.742123 |
Target: 5'- aGCCuCGGcGCGGGUgAACGGgucagGCgGGGg -3' miRNA: 3'- -CGG-GCCaCGUCUAgUUGCUa----UGgCUC- -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 19037 | 0.67 | 0.735655 |
Target: 5'- aGCCCuGGUaGCGgccgccggcggcgucGAUCAGCGuguccucGCCGAGg -3' miRNA: 3'- -CGGG-CCA-CGU---------------CUAGUUGCua-----UGGCUC- -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 22152 | 0.67 | 0.731321 |
Target: 5'- -aCUGGUGCGGG-CAACGAcgGCCa-- -3' miRNA: 3'- cgGGCCACGUCUaGUUGCUa-UGGcuc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 33614 | 0.67 | 0.709413 |
Target: 5'- gGCCCGacccaGCAGAUCGguacugaccgGCGcgGCCGAc -3' miRNA: 3'- -CGGGCca---CGUCUAGU----------UGCuaUGGCUc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 32571 | 0.67 | 0.698332 |
Target: 5'- cGCgCCGGUGCcacgcucAUCGACGccgaaACCGAGg -3' miRNA: 3'- -CG-GGCCACGuc-----UAGUUGCua---UGGCUC- -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 23953 | 0.68 | 0.67598 |
Target: 5'- cGCCCGGcG-AGGUCGGCauuUGCCGAu -3' miRNA: 3'- -CGGGCCaCgUCUAGUUGcu-AUGGCUc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 37072 | 0.68 | 0.664732 |
Target: 5'- gGCgCGGUGCAGGcggccacgCAgcGCGAUGCCa-- -3' miRNA: 3'- -CGgGCCACGUCUa-------GU--UGCUAUGGcuc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 10941 | 0.68 | 0.664732 |
Target: 5'- gGCCuCGG-GCAGuugcgCGGCGAcaGCCGGGg -3' miRNA: 3'- -CGG-GCCaCGUCua---GUUGCUa-UGGCUC- -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 13467 | 0.68 | 0.663606 |
Target: 5'- gGCgCGGUGuCGGGcaugaccUgGGCGAUGCCGAc -3' miRNA: 3'- -CGgGCCAC-GUCU-------AgUUGCUAUGGCUc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 42239 | 0.68 | 0.653452 |
Target: 5'- cGCCCGGcagcgUGaCGGugccCAGCGAcACCGGGg -3' miRNA: 3'- -CGGGCC-----AC-GUCua--GUUGCUaUGGCUC- -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 27630 | 0.68 | 0.642152 |
Target: 5'- cGCCgaGGUGCAGGUuucCAGCGAcAUCGuGa -3' miRNA: 3'- -CGGg-CCACGUCUA---GUUGCUaUGGCuC- -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 31098 | 0.68 | 0.630841 |
Target: 5'- cCUCGGUGCAGGcCGGCGAguggugCGAGa -3' miRNA: 3'- cGGGCCACGUCUaGUUGCUaug---GCUC- -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 32851 | 0.69 | 0.574512 |
Target: 5'- cGCCUGGccGCAGA-CGGuCGGcGCCGAGa -3' miRNA: 3'- -CGGGCCa-CGUCUaGUU-GCUaUGGCUC- -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 11428 | 0.7 | 0.541236 |
Target: 5'- aGCCgGcGUGCAGGUCGccgauaaggcGCGAcACCGGc -3' miRNA: 3'- -CGGgC-CACGUCUAGU----------UGCUaUGGCUc -5' |
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26516 | 3' | -53.1 | NC_005357.1 | + | 31405 | 0.71 | 0.497942 |
Target: 5'- gGCCCGGUGCAGcagguguUCAuCGAcGCCa-- -3' miRNA: 3'- -CGGGCCACGUCu------AGUuGCUaUGGcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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