Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26516 | 3' | -53.1 | NC_005357.1 | + | 33614 | 0.67 | 0.709413 |
|
Target: 5'- gGCCCGacccaGCAGAUCGguacugaccgGCGcgGCCGAc -3' miRNA: 3'- -CGGGCca---CGUCUAGU----------UGCuaUGGCUc -5' |
|||||||
| 26516 | 3' | -53.1 | NC_005357.1 | + | 34878 | 0.66 | 0.763365 |
|
Target: 5'- -gCCGGUggcgccGCGGAUCGagcACGccGCCGAGc -3' miRNA: 3'- cgGGCCA------CGUCUAGU---UGCuaUGGCUC- -5' |
|||||||
| 26516 | 3' | -53.1 | NC_005357.1 | + | 35052 | 0.71 | 0.487357 |
|
Target: 5'- cGCCgCGGUGCccgccgcuGGAcgAACGAcGCCGAGg -3' miRNA: 3'- -CGG-GCCACG--------UCUagUUGCUaUGGCUC- -5' |
|||||||
| 26516 | 3' | -53.1 | NC_005357.1 | + | 37072 | 0.68 | 0.664732 |
|
Target: 5'- gGCgCGGUGCAGGcggccacgCAgcGCGAUGCCa-- -3' miRNA: 3'- -CGgGCCACGUCUa-------GU--UGCUAUGGcuc -5' |
|||||||
| 26516 | 3' | -53.1 | NC_005357.1 | + | 37935 | 0.66 | 0.794129 |
|
Target: 5'- cGCCC-GUG-AGAUUAccguCGAUACCGAc -3' miRNA: 3'- -CGGGcCACgUCUAGUu---GCUAUGGCUc -5' |
|||||||
| 26516 | 3' | -53.1 | NC_005357.1 | + | 38344 | 0.66 | 0.784037 |
|
Target: 5'- aCCaCGGcGCAGAUCAACGAauacaGCCu-- -3' miRNA: 3'- cGG-GCCaCGUCUAGUUGCUa----UGGcuc -5' |
|||||||
| 26516 | 3' | -53.1 | NC_005357.1 | + | 42239 | 0.68 | 0.653452 |
|
Target: 5'- cGCCCGGcagcgUGaCGGugccCAGCGAcACCGGGg -3' miRNA: 3'- -CGGGCC-----AC-GUCua--GUUGCUaUGGCUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home