miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26516 5' -62.3 NC_005357.1 + 1832 0.65 0.302764
Target:  5'- --aGUGGCCGaagaaagccaggaUGUUGCCGCCGUCUu -3'
miRNA:   3'- uagCGCCGGUa------------GCAACGGCGGCGGGu -5'
26516 5' -62.3 NC_005357.1 + 12322 0.66 0.295436
Target:  5'- -gCGCGGCCucAUCGccugggacaaggGCCGUggCGCCCGg -3'
miRNA:   3'- uaGCGCCGG--UAGCaa----------CGGCG--GCGGGU- -5'
26516 5' -62.3 NC_005357.1 + 40058 0.66 0.291107
Target:  5'- -cCGUGcGCCucgaacCGUUGCCGuUUGCCCAg -3'
miRNA:   3'- uaGCGC-CGGua----GCAACGGC-GGCGGGU- -5'
26516 5' -62.3 NC_005357.1 + 20266 0.66 0.29039
Target:  5'- uGUUGCugcuguuGGCCGUCGUUGC--CCGCaCCAg -3'
miRNA:   3'- -UAGCG-------CCGGUAGCAACGgcGGCG-GGU- -5'
26516 5' -62.3 NC_005357.1 + 4651 0.66 0.28896
Target:  5'- -gCGuCGGCCAUCGcgucaaggucgaUGCCguagguaGCCGCCCc -3'
miRNA:   3'- uaGC-GCCGGUAGCa-----------ACGG-------CGGCGGGu -5'
26516 5' -62.3 NC_005357.1 + 10327 0.66 0.277033
Target:  5'- --aGCGGCCAgggCGUUGagcaaCGCgGCCg- -3'
miRNA:   3'- uagCGCCGGUa--GCAACg----GCGgCGGgu -5'
26516 5' -62.3 NC_005357.1 + 4046 0.66 0.277033
Target:  5'- -cCGCGGCgAgCGgcagGCCaGCgGCCCAg -3'
miRNA:   3'- uaGCGCCGgUaGCaa--CGG-CGgCGGGU- -5'
26516 5' -62.3 NC_005357.1 + 22233 0.66 0.263508
Target:  5'- -aCGCGGCCcUgGUUGUCGgCCGCg-- -3'
miRNA:   3'- uaGCGCCGGuAgCAACGGC-GGCGggu -5'
26516 5' -62.3 NC_005357.1 + 14213 0.67 0.256949
Target:  5'- -gCGUGGUCGUCGgcGUgGCCGaCCUg -3'
miRNA:   3'- uaGCGCCGGUAGCaaCGgCGGC-GGGu -5'
26516 5' -62.3 NC_005357.1 + 12625 0.67 0.256949
Target:  5'- -aCGCGcucGgCAUCGcUGCUGCCGUCCu -3'
miRNA:   3'- uaGCGC---CgGUAGCaACGGCGGCGGGu -5'
26516 5' -62.3 NC_005357.1 + 37536 0.67 0.250524
Target:  5'- -cCGUGGCCGaaaaCGagGCCGCCGUCg- -3'
miRNA:   3'- uaGCGCCGGUa---GCaaCGGCGGCGGgu -5'
26516 5' -62.3 NC_005357.1 + 12722 0.67 0.250524
Target:  5'- aGUCGCccGGcCCGUUGgugcugggUGCCGC-GCCCAg -3'
miRNA:   3'- -UAGCG--CC-GGUAGCa-------ACGGCGgCGGGU- -5'
26516 5' -62.3 NC_005357.1 + 28837 0.67 0.250524
Target:  5'- gGUUGCGGCCGgacUUGCCgaaGCUGuCCCAg -3'
miRNA:   3'- -UAGCGCCGGUagcAACGG---CGGC-GGGU- -5'
26516 5' -62.3 NC_005357.1 + 18885 0.67 0.250524
Target:  5'- uGUCGgccgaGGCCAUCGaccgcgUG-CGCCGCCUg -3'
miRNA:   3'- -UAGCg----CCGGUAGCa-----ACgGCGGCGGGu -5'
26516 5' -62.3 NC_005357.1 + 16823 0.67 0.244232
Target:  5'- -cCGCGccGCCGUgGUUGCCaCUGCCUg -3'
miRNA:   3'- uaGCGC--CGGUAgCAACGGcGGCGGGu -5'
26516 5' -62.3 NC_005357.1 + 14297 0.67 0.244232
Target:  5'- -aUGCGGCCcacGUCGUUGCugaacuggCGCgCGCCUu -3'
miRNA:   3'- uaGCGCCGG---UAGCAACG--------GCG-GCGGGu -5'
26516 5' -62.3 NC_005357.1 + 91 0.67 0.232043
Target:  5'- --aGCGaGCCAuuuccagaUCGUucUGCgCGCCGUCCAa -3'
miRNA:   3'- uagCGC-CGGU--------AGCA--ACG-GCGGCGGGU- -5'
26516 5' -62.3 NC_005357.1 + 41113 0.68 0.214723
Target:  5'- cUUGuCGGCC-UgGUgGCCGUCGCCCu -3'
miRNA:   3'- uAGC-GCCGGuAgCAaCGGCGGCGGGu -5'
26516 5' -62.3 NC_005357.1 + 19154 0.68 0.214723
Target:  5'- -cCGuCaGCCAgauggaugCGUUGUCGCUGCCCGu -3'
miRNA:   3'- uaGC-GcCGGUa-------GCAACGGCGGCGGGU- -5'
26516 5' -62.3 NC_005357.1 + 38238 0.68 0.214723
Target:  5'- cUCGCGGCCAacaugcccgccaUCGagGCgGCCGgCUAc -3'
miRNA:   3'- uAGCGCCGGU------------AGCaaCGgCGGCgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.