Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2652 | 5' | -64.7 | NC_001491.2 | + | 99871 | 1.09 | 0.000482 |
Target: 5'- cUGGGCAGGUCCCGCCGCCACCCACGCc -3' miRNA: 3'- -ACCCGUCCAGGGCGGCGGUGGGUGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 28783 | 0.75 | 0.140888 |
Target: 5'- aUGcGGCAGGaUCCGUCGCaCGCCC-CGCa -3' miRNA: 3'- -AC-CCGUCCaGGGCGGCG-GUGGGuGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 5365 | 0.75 | 0.144353 |
Target: 5'- gGGGUAGGaggaCCGCCGCUGCCgGCGg -3' miRNA: 3'- aCCCGUCCag--GGCGGCGGUGGgUGCg -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 148418 | 0.74 | 0.1835 |
Target: 5'- gGGGC-GGUCaucaCGCuCGCCGUCCACGCc -3' miRNA: 3'- aCCCGuCCAGg---GCG-GCGGUGGGUGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 21715 | 0.72 | 0.216238 |
Target: 5'- aGGGUcugGGGUCCUGUgGCCugCCucaGCGUa -3' miRNA: 3'- aCCCG---UCCAGGGCGgCGGugGG---UGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 27105 | 0.72 | 0.216238 |
Target: 5'- cGGGC-GG-CCCGgCGCCGCUCcggaGCGCg -3' miRNA: 3'- aCCCGuCCaGGGCgGCGGUGGG----UGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 2191 | 0.71 | 0.265544 |
Target: 5'- gGGGCcccGGUCCaGuuGCCGgCCCAgGCg -3' miRNA: 3'- aCCCGu--CCAGGgCggCGGU-GGGUgCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 136040 | 0.71 | 0.26614 |
Target: 5'- aGGGCGGGaaccucugggaagggCUCGUCGCCAUgCGCGUu -3' miRNA: 3'- aCCCGUCCa--------------GGGCGGCGGUGgGUGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 92262 | 0.71 | 0.271552 |
Target: 5'- aGGcGCuGG-CCaUGCCgGCCACCCugGCu -3' miRNA: 3'- aCC-CGuCCaGG-GCGG-CGGUGGGugCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 28229 | 0.71 | 0.271552 |
Target: 5'- aGGGCGa--CUCGUCGCCGCUCACGUc -3' miRNA: 3'- aCCCGUccaGGGCGGCGGUGGGUGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 64333 | 0.71 | 0.283895 |
Target: 5'- cUGGGauGGUCCacaccgGCCGCCACaCACGCc -3' miRNA: 3'- -ACCCguCCAGGg-----CGGCGGUGgGUGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 69782 | 0.7 | 0.303235 |
Target: 5'- aGGGCGucGGUgUCGaCgGCCACUCugGCg -3' miRNA: 3'- aCCCGU--CCAgGGC-GgCGGUGGGugCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 24744 | 0.7 | 0.309903 |
Target: 5'- gGGacccGCGGGcgCCCGCCGCC-CgCCGgGCg -3' miRNA: 3'- aCC----CGUCCa-GGGCGGCGGuG-GGUgCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 54445 | 0.69 | 0.336969 |
Target: 5'- aUGGGCuccgcacGGGcUCCCGa-GCUAUCCACGUa -3' miRNA: 3'- -ACCCG-------UCC-AGGGCggCGGUGGGUGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 3699 | 0.69 | 0.359685 |
Target: 5'- cUGGGCGcccuGGUCCCcggaGCgGCCGCggCCGCGg -3' miRNA: 3'- -ACCCGU----CCAGGG----CGgCGGUG--GGUGCg -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 8446 | 0.69 | 0.367237 |
Target: 5'- gGGGCGugcgacGGaUCCUGCCGCaugGCCCA-GCg -3' miRNA: 3'- aCCCGU------CC-AGGGCGGCGg--UGGGUgCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 141754 | 0.68 | 0.382665 |
Target: 5'- aGaGGCGGGUUCCGCUGggcaugcuUCACCUcgcaauGCGCg -3' miRNA: 3'- aC-CCGUCCAGGGCGGC--------GGUGGG------UGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 10041 | 0.68 | 0.382665 |
Target: 5'- cGGcGCAcgcGGUCUCGCUGCCGCgCUcCGUg -3' miRNA: 3'- aCC-CGU---CCAGGGCGGCGGUG-GGuGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 35772 | 0.68 | 0.390539 |
Target: 5'- cUGGuGCugcccaucaccgAGGcucCCCGCCGCCgaGCCC-CGCg -3' miRNA: 3'- -ACC-CG------------UCCa--GGGCGGCGG--UGGGuGCG- -5' |
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2652 | 5' | -64.7 | NC_001491.2 | + | 100069 | 0.68 | 0.390539 |
Target: 5'- cGGcGCAGGUucuUCCGCgGCUGCgUACGUg -3' miRNA: 3'- aCC-CGUCCA---GGGCGgCGGUGgGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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