miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2652 5' -64.7 NC_001491.2 + 1363 0.66 0.538793
Target:  5'- -cGGCAGGcacagCuCCGUgGCC-CCCAUGUg -3'
miRNA:   3'- acCCGUCCa----G-GGCGgCGGuGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 2191 0.71 0.265544
Target:  5'- gGGGCcccGGUCCaGuuGCCGgCCCAgGCg -3'
miRNA:   3'- aCCCGu--CCAGGgCggCGGU-GGGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 2688 0.68 0.425578
Target:  5'- gGGGCccucggcuggcauGGGUCCCagggcccggggaGCCugguggcccggggugGCCACCCuGCGCu -3'
miRNA:   3'- aCCCG-------------UCCAGGG------------CGG---------------CGGUGGG-UGCG- -5'
2652 5' -64.7 NC_001491.2 + 3311 0.67 0.474775
Target:  5'- cUGGGUgacGGUCCagGCCGagGCCCGgGCc -3'
miRNA:   3'- -ACCCGu--CCAGGg-CGGCggUGGGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 3699 0.69 0.359685
Target:  5'- cUGGGCGcccuGGUCCCcggaGCgGCCGCggCCGCGg -3'
miRNA:   3'- -ACCCGU----CCAGGG----CGgCGGUG--GGUGCg -5'
2652 5' -64.7 NC_001491.2 + 4389 0.67 0.465934
Target:  5'- cGGGCcagGGGUCCCcggacggggugaGaaGCgGCUCGCGCu -3'
miRNA:   3'- aCCCG---UCCAGGG------------CggCGgUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 5181 0.66 0.523867
Target:  5'- cGGGCAGGUCUcgguauCGCUgucgagggcgaccggGUCGgCCGCGUc -3'
miRNA:   3'- aCCCGUCCAGG------GCGG---------------CGGUgGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 5365 0.75 0.144353
Target:  5'- gGGGUAGGaggaCCGCCGCUGCCgGCGg -3'
miRNA:   3'- aCCCGUCCag--GGCGGCGGUGGgUGCg -5'
2652 5' -64.7 NC_001491.2 + 8446 0.69 0.367237
Target:  5'- gGGGCGugcgacGGaUCCUGCCGCaugGCCCA-GCg -3'
miRNA:   3'- aCCCGU------CC-AGGGCGGCGg--UGGGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 10041 0.68 0.382665
Target:  5'- cGGcGCAcgcGGUCUCGCUGCCGCgCUcCGUg -3'
miRNA:   3'- aCC-CGU---CCAGGGCGGCGGUG-GGuGCG- -5'
2652 5' -64.7 NC_001491.2 + 12550 0.67 0.457178
Target:  5'- cGGGCGcGGgagCgCGCgagCGCCGCCUcgggGCGCg -3'
miRNA:   3'- aCCCGU-CCa--GgGCG---GCGGUGGG----UGCG- -5'
2652 5' -64.7 NC_001491.2 + 21715 0.72 0.216238
Target:  5'- aGGGUcugGGGUCCUGUgGCCugCCucaGCGUa -3'
miRNA:   3'- aCCCG---UCCAGGGCGgCGGugGG---UGCG- -5'
2652 5' -64.7 NC_001491.2 + 24744 0.7 0.309903
Target:  5'- gGGacccGCGGGcgCCCGCCGCC-CgCCGgGCg -3'
miRNA:   3'- aCC----CGUCCa-GGGCGGCGGuG-GGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 25753 0.68 0.414787
Target:  5'- gGGGcCAGGcagcCCCGCaGCCGCgCgCACGUg -3'
miRNA:   3'- aCCC-GUCCa---GGGCGgCGGUG-G-GUGCG- -5'
2652 5' -64.7 NC_001491.2 + 26758 0.66 0.501784
Target:  5'- cGGGCucGGcgCCCGCCauguugaguagcGCgGCCCaguaGCGCu -3'
miRNA:   3'- aCCCGu-CCa-GGGCGG------------CGgUGGG----UGCG- -5'
2652 5' -64.7 NC_001491.2 + 27105 0.72 0.216238
Target:  5'- cGGGC-GG-CCCGgCGCCGCUCcggaGCGCg -3'
miRNA:   3'- aCCCGuCCaGGGCgGCGGUGGG----UGCG- -5'
2652 5' -64.7 NC_001491.2 + 28229 0.71 0.271552
Target:  5'- aGGGCGa--CUCGUCGCCGCUCACGUc -3'
miRNA:   3'- aCCCGUccaGGGCGGCGGUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 28783 0.75 0.140888
Target:  5'- aUGcGGCAGGaUCCGUCGCaCGCCC-CGCa -3'
miRNA:   3'- -AC-CCGUCCaGGGCGGCG-GUGGGuGCG- -5'
2652 5' -64.7 NC_001491.2 + 31356 0.67 0.439085
Target:  5'- gGGGCGuGGUuaccaCCCaagcgggggagagGCCcagGCCGCCCGCGUu -3'
miRNA:   3'- aCCCGU-CCA-----GGG-------------CGG---CGGUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 31870 0.67 0.465934
Target:  5'- aGcGGC-GGUCCUccuaccccggcgGCUGCCGCCCA-GCc -3'
miRNA:   3'- aC-CCGuCCAGGG------------CGGCGGUGGGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.