miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26524 3' -59.8 NC_005357.1 + 604 0.66 0.378152
Target:  5'- cCGCCUGCgggucGgCCAGCaGCgCCGugGAc- -3'
miRNA:   3'- -GCGGAUG-----UgGGUCGcCG-GGCugCUua -5'
26524 3' -59.8 NC_005357.1 + 1767 0.7 0.218796
Target:  5'- gGCCUGCGCCUGGCGcGUCgGGCcGAUa -3'
miRNA:   3'- gCGGAUGUGGGUCGC-CGGgCUGcUUA- -5'
26524 3' -59.8 NC_005357.1 + 2726 0.68 0.297306
Target:  5'- gGCCggACGCUUgagcGCGGCCCGGCGc-- -3'
miRNA:   3'- gCGGa-UGUGGGu---CGCCGGGCUGCuua -5'
26524 3' -59.8 NC_005357.1 + 4118 0.67 0.344116
Target:  5'- aGCCUGCGCUgCAGCGuugcuuCCCGGCGcAUa -3'
miRNA:   3'- gCGGAUGUGG-GUCGCc-----GGGCUGCuUA- -5'
26524 3' -59.8 NC_005357.1 + 5736 0.66 0.405123
Target:  5'- uCGCacagauCGCCCAGCGcGCCgGgcaGCGAGUg -3'
miRNA:   3'- -GCGgau---GUGGGUCGC-CGGgC---UGCUUA- -5'
26524 3' -59.8 NC_005357.1 + 7729 0.68 0.296569
Target:  5'- aGCgcACGCUCGGCGGCCggcuugcuguuggCGACGAAg -3'
miRNA:   3'- gCGgaUGUGGGUCGCCGG-------------GCUGCUUa -5'
26524 3' -59.8 NC_005357.1 + 8173 0.7 0.224598
Target:  5'- gCGCgUGCGCCCGGauGCugCCGGCGAu- -3'
miRNA:   3'- -GCGgAUGUGGGUCgcCG--GGCUGCUua -5'
26524 3' -59.8 NC_005357.1 + 9202 0.67 0.327943
Target:  5'- gGCCU--GCUCGGCGGCgCGGCGc-- -3'
miRNA:   3'- gCGGAugUGGGUCGCCGgGCUGCuua -5'
26524 3' -59.8 NC_005357.1 + 11341 0.67 0.360855
Target:  5'- gGCCUGCACCgaggugagCAGCGGCaCCaGGCc--- -3'
miRNA:   3'- gCGGAUGUGG--------GUCGCCG-GG-CUGcuua -5'
26524 3' -59.8 NC_005357.1 + 11376 0.66 0.387008
Target:  5'- uCGCCcgGCACCuCGGUGGCgacCUGAUGGGc -3'
miRNA:   3'- -GCGGa-UGUGG-GUCGCCG---GGCUGCUUa -5'
26524 3' -59.8 NC_005357.1 + 11413 0.66 0.387008
Target:  5'- uGCCU-CGgCCGGCaaGCCCGugGAc- -3'
miRNA:   3'- gCGGAuGUgGGUCGc-CGGGCugCUua -5'
26524 3' -59.8 NC_005357.1 + 11515 0.67 0.352415
Target:  5'- gCGCCUGCGCUgGcGUgaGGCCCuGCGAGc -3'
miRNA:   3'- -GCGGAUGUGGgU-CG--CCGGGcUGCUUa -5'
26524 3' -59.8 NC_005357.1 + 11765 1.05 0.000478
Target:  5'- cCGCCUACACCCAGCGGCCCGACGAAUu -3'
miRNA:   3'- -GCGGAUGUGGGUCGCCGGGCUGCUUA- -5'
26524 3' -59.8 NC_005357.1 + 14421 0.66 0.414379
Target:  5'- uCGCCagGCGCgCCuGCGGCaCCGuguuggGCGAAa -3'
miRNA:   3'- -GCGGa-UGUG-GGuCGCCG-GGC------UGCUUa -5'
26524 3' -59.8 NC_005357.1 + 16115 0.68 0.28284
Target:  5'- cCGgCUGCACgUCGGUGGcCCCGACGu-- -3'
miRNA:   3'- -GCgGAUGUG-GGUCGCC-GGGCUGCuua -5'
26524 3' -59.8 NC_005357.1 + 16677 0.66 0.384337
Target:  5'- cCGCCcagcagcGCGCCCAGCGuGCUgccgccggugaggaCGACGAc- -3'
miRNA:   3'- -GCGGa------UGUGGGUCGC-CGG--------------GCUGCUua -5'
26524 3' -59.8 NC_005357.1 + 17066 0.7 0.213123
Target:  5'- gCGCCU--GCCCGGUGGCCgGcuauGCGAAc -3'
miRNA:   3'- -GCGGAugUGGGUCGCCGGgC----UGCUUa -5'
26524 3' -59.8 NC_005357.1 + 17798 0.67 0.360855
Target:  5'- cCGCCgGCACgCCAuGUGGUUCGACGu-- -3'
miRNA:   3'- -GCGGaUGUG-GGU-CGCCGGGCUGCuua -5'
26524 3' -59.8 NC_005357.1 + 17841 0.67 0.352415
Target:  5'- gGCaaggACACgCCGGaCGGCCCGACc--- -3'
miRNA:   3'- gCGga--UGUG-GGUC-GCCGGGCUGcuua -5'
26524 3' -59.8 NC_005357.1 + 18389 0.69 0.262194
Target:  5'- uGCCgaugGCGCCgguGGCGGCCacguCGGCGAAg -3'
miRNA:   3'- gCGGa---UGUGGg--UCGCCGG----GCUGCUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.