Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26524 | 3' | -59.8 | NC_005357.1 | + | 23092 | 0.66 | 0.395998 |
Target: 5'- uCGCCccgACGCCaaCGGCGGCgcccaCGGCGAc- -3' miRNA: 3'- -GCGGa--UGUGG--GUCGCCGg----GCUGCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 4118 | 0.67 | 0.344116 |
Target: 5'- aGCCUGCGCUgCAGCGuugcuuCCCGGCGcAUa -3' miRNA: 3'- gCGGAUGUGG-GUCGCc-----GGGCUGCuUA- -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 11515 | 0.67 | 0.352415 |
Target: 5'- gCGCCUGCGCUgGcGUgaGGCCCuGCGAGc -3' miRNA: 3'- -GCGGAUGUGGgU-CG--CCGGGcUGCUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 18440 | 0.67 | 0.360004 |
Target: 5'- aGuCCUGCACCgAaaacgugacggucGCGGCgCCGGCGGc- -3' miRNA: 3'- gC-GGAUGUGGgU-------------CGCCG-GGCUGCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 604 | 0.66 | 0.378152 |
Target: 5'- cCGCCUGCgggucGgCCAGCaGCgCCGugGAc- -3' miRNA: 3'- -GCGGAUG-----UgGGUCGcCG-GGCugCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 11376 | 0.66 | 0.387008 |
Target: 5'- uCGCCcgGCACCuCGGUGGCgacCUGAUGGGc -3' miRNA: 3'- -GCGGa-UGUGG-GUCGCCG---GGCUGCUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 26249 | 0.66 | 0.387008 |
Target: 5'- uCGCCgaaggcacggGCACCCGcCGGCCUGGuCGGc- -3' miRNA: 3'- -GCGGa---------UGUGGGUcGCCGGGCU-GCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 30145 | 0.66 | 0.395998 |
Target: 5'- gGCCUGCACCgcgucggacauCAGCGGCaguUGGCGc-- -3' miRNA: 3'- gCGGAUGUGG-----------GUCGCCGg--GCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 25079 | 0.66 | 0.395998 |
Target: 5'- uCGCC---ACCCAGCGcagcgcGCCCGGCGc-- -3' miRNA: 3'- -GCGGaugUGGGUCGC------CGGGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 40181 | 0.67 | 0.335959 |
Target: 5'- gCGUCgaACugCCGGCcaaGGCCCGGCGu-- -3' miRNA: 3'- -GCGGa-UGugGGUCG---CCGGGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 9202 | 0.67 | 0.327943 |
Target: 5'- gGCCU--GCUCGGCGGCgCGGCGc-- -3' miRNA: 3'- gCGGAugUGGGUCGCCGgGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 31299 | 0.67 | 0.327943 |
Target: 5'- aGCCUGgcgacCGCgUGGUGGCCCGGCuGGAa -3' miRNA: 3'- gCGGAU-----GUGgGUCGCCGGGCUG-CUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 27422 | 0.71 | 0.176862 |
Target: 5'- gCGCCUggcgcaccGCGCCCGGCGGCCgcaGGCc--- -3' miRNA: 3'- -GCGGA--------UGUGGGUCGCCGGg--CUGcuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 38338 | 0.71 | 0.186623 |
Target: 5'- gCGCCgccCACCUGGcCGGCCUGAUGGc- -3' miRNA: 3'- -GCGGau-GUGGGUC-GCCGGGCUGCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 39615 | 0.71 | 0.196856 |
Target: 5'- cCGCgaGCACCU---GGCCCGACGAAUc -3' miRNA: 3'- -GCGgaUGUGGGucgCCGGGCUGCUUA- -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 28183 | 0.7 | 0.207576 |
Target: 5'- uGCCcACGCCCAGCaGGUgCGGCGc-- -3' miRNA: 3'- gCGGaUGUGGGUCG-CCGgGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 8173 | 0.7 | 0.224598 |
Target: 5'- gCGCgUGCGCCCGGauGCugCCGGCGAu- -3' miRNA: 3'- -GCGgAUGUGGGUCgcCG--GGCUGCUua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 18389 | 0.69 | 0.262194 |
Target: 5'- uGCCgaugGCGCCgguGGCGGCCacguCGGCGAAg -3' miRNA: 3'- gCGGa---UGUGGg--UCGCCGG----GCUGCUUa -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 16115 | 0.68 | 0.28284 |
Target: 5'- cCGgCUGCACgUCGGUGGcCCCGACGu-- -3' miRNA: 3'- -GCgGAUGUG-GGUCGCC-GGGCUGCuua -5' |
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26524 | 3' | -59.8 | NC_005357.1 | + | 37853 | 0.68 | 0.297306 |
Target: 5'- uCGCCUggcGCACCgAGCaGcGCCuCGGCGAc- -3' miRNA: 3'- -GCGGA---UGUGGgUCG-C-CGG-GCUGCUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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