Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26527 | 5' | -55.7 | NC_005357.1 | + | 26049 | 0.68 | 0.508427 |
Target: 5'- cCGCGCGGCgGGCGCGCuccaugcgcucGGcGAACUcgggGCGg -3' miRNA: 3'- -GCGUGCUG-UCGUGCG-----------CC-CUUGAa---CGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 26370 | 0.71 | 0.336399 |
Target: 5'- gCGCGCGGCGGcCACGUGcGcGAACUgGCc -3' miRNA: 3'- -GCGUGCUGUC-GUGCGC-C-CUUGAaCGu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 28271 | 0.66 | 0.618434 |
Target: 5'- gCGCACcauGACcGCGCGCuGGGACacgGCGc -3' miRNA: 3'- -GCGUG---CUGuCGUGCGcCCUUGaa-CGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 29599 | 0.69 | 0.445428 |
Target: 5'- gCGCGCGGuuugccaguugucCAGCGC-CGGGcGCUUGUg -3' miRNA: 3'- -GCGUGCU-------------GUCGUGcGCCCuUGAACGu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 35338 | 0.67 | 0.540771 |
Target: 5'- uGCGCGugGGCGCGCcguGGGuaGGCcgcgGCGu -3' miRNA: 3'- gCGUGCugUCGUGCG---CCC--UUGaa--CGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 35807 | 0.71 | 0.336399 |
Target: 5'- gCGCGCGA-AGCugGCGGcGGACUacgccaUGCu -3' miRNA: 3'- -GCGUGCUgUCGugCGCC-CUUGA------ACGu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 35977 | 0.67 | 0.550612 |
Target: 5'- uGCGCGACGGCGacgccuuCGCGGGcggugGugUcGCGa -3' miRNA: 3'- gCGUGCUGUCGU-------GCGCCC-----UugAaCGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 38879 | 0.66 | 0.573776 |
Target: 5'- uGCgGCG-CGGUugGCGGGAcugcGCggugUGCGg -3' miRNA: 3'- gCG-UGCuGUCGugCGCCCU----UGa---ACGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 39157 | 0.7 | 0.361974 |
Target: 5'- aGCACGGCGuuGCGCGGGAAa-UGUu -3' miRNA: 3'- gCGUGCUGUcgUGCGCCCUUgaACGu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 40761 | 0.66 | 0.596041 |
Target: 5'- uGCGCGGCAGCaucACGCGcaaacaGGACgcGCAg -3' miRNA: 3'- gCGUGCUGUCG---UGCGCc-----CUUGaaCGU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 40848 | 0.66 | 0.618434 |
Target: 5'- cCGUGUGGCAGgACGUGGaGGACUUGa- -3' miRNA: 3'- -GCGUGCUGUCgUGCGCC-CUUGAACgu -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 41140 | 0.66 | 0.607226 |
Target: 5'- gGCGCGGCGGUguGgGCGGGcaucaccucgaAACUUGgGg -3' miRNA: 3'- gCGUGCUGUCG--UgCGCCC-----------UUGAACgU- -5' |
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26527 | 5' | -55.7 | NC_005357.1 | + | 42256 | 0.68 | 0.487324 |
Target: 5'- aCGC-CGGCAuucuGCGCGCGGcAGCUUGg- -3' miRNA: 3'- -GCGuGCUGU----CGUGCGCCcUUGAACgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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