miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26528 5' -55.9 NC_005357.1 + 36043 0.7 0.38124
Target:  5'- cGGgccgGCCGgccugcgCCUgauUGCCGACGUGGgCCg -3'
miRNA:   3'- aCUa---UGGCa------GGA---GCGGCUGCAUCgGG- -5'
26528 5' -55.9 NC_005357.1 + 8957 0.66 0.616289
Target:  5'- cGGUgGCCGUgCCgcgauaGCCaGCGUGGCCg -3'
miRNA:   3'- aCUA-UGGCA-GGag----CGGcUGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 14194 0.68 0.528107
Target:  5'- cUGGcGCaGUCCgacccgcgcguggUCGUCGGCGUGGCCg -3'
miRNA:   3'- -ACUaUGgCAGG-------------AGCGGCUGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 8231 0.71 0.363677
Target:  5'- cGcgGCCGUgcCCUCGUCGGCGaAGUCg -3'
miRNA:   3'- aCuaUGGCA--GGAGCGGCUGCaUCGGg -5'
26528 5' -55.9 NC_005357.1 + 1859 0.66 0.65384
Target:  5'- ---cGCCGUCUugcagguucagcccgUgGCCGGCGcUGGCCg -3'
miRNA:   3'- acuaUGGCAGG---------------AgCGGCUGC-AUCGGg -5'
26528 5' -55.9 NC_005357.1 + 4857 0.71 0.363677
Target:  5'- aGcgGCCagcuuccaaUCCUCGCCGGCG-AGCCa -3'
miRNA:   3'- aCuaUGGc--------AGGAGCGGCUGCaUCGGg -5'
26528 5' -55.9 NC_005357.1 + 16407 0.71 0.363677
Target:  5'- uUGAUGCCa---UCGCCGAgGaAGCCCu -3'
miRNA:   3'- -ACUAUGGcaggAGCGGCUgCaUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 16517 0.72 0.314427
Target:  5'- aGGUGCCGguggUCUgGCCGAUaUAGCCg -3'
miRNA:   3'- aCUAUGGCa---GGAgCGGCUGcAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 32636 0.66 0.627334
Target:  5'- cGGUcGCUGUCCUgucgaaguucggCGCCGcgaagcugcccgACGUgaAGCCCg -3'
miRNA:   3'- aCUA-UGGCAGGA------------GCGGC------------UGCA--UCGGG- -5'
26528 5' -55.9 NC_005357.1 + 19271 0.66 0.626229
Target:  5'- cGAUGCUGgaaUCGCCGuagaacaGCGUGGUCg -3'
miRNA:   3'- aCUAUGGCaggAGCGGC-------UGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 18367 0.69 0.462877
Target:  5'- --uUGCCGgcggcgagguuggCCUUGCCGAUGgcGCCg -3'
miRNA:   3'- acuAUGGCa------------GGAGCGGCUGCauCGGg -5'
26528 5' -55.9 NC_005357.1 + 3758 0.69 0.456881
Target:  5'- cGGUGCCG-CC--GCUgGACGUAGCCUc -3'
miRNA:   3'- aCUAUGGCaGGagCGG-CUGCAUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 25426 0.69 0.437203
Target:  5'- aUGAUuuCCGUCaugCGCUGcACGaAGCCCu -3'
miRNA:   3'- -ACUAu-GGCAGga-GCGGC-UGCaUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 12640 0.7 0.39936
Target:  5'- cUGcUGCCGUCCUuuggCGUCGGguCGUcGCCCa -3'
miRNA:   3'- -ACuAUGGCAGGA----GCGGCU--GCAuCGGG- -5'
26528 5' -55.9 NC_005357.1 + 8041 0.73 0.27737
Target:  5'- ---cGCCGUCCUUGCCGcCGUccaugacgcgcGCCCa -3'
miRNA:   3'- acuaUGGCAGGAGCGGCuGCAu----------CGGG- -5'
26528 5' -55.9 NC_005357.1 + 24438 0.67 0.583274
Target:  5'- cGGUGCCGcgcgcggCCUcggcgacauugaCGCCGACGaccugcugcuUGGCCUg -3'
miRNA:   3'- aCUAUGGCa------GGA------------GCGGCUGC----------AUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 24599 0.66 0.605258
Target:  5'- ---gGCgUGUCCUUGCCGGgGUAGgUCa -3'
miRNA:   3'- acuaUG-GCAGGAGCGGCUgCAUCgGG- -5'
26528 5' -55.9 NC_005357.1 + 17274 0.66 0.605258
Target:  5'- gGAUauuGCCGUCCacgaaGCCGGCGccgcgGGCgCg -3'
miRNA:   3'- aCUA---UGGCAGGag---CGGCUGCa----UCGgG- -5'
26528 5' -55.9 NC_005357.1 + 28878 0.66 0.605258
Target:  5'- -----aCGUCCUCGCUgcuGGCGUAGUUg -3'
miRNA:   3'- acuaugGCAGGAGCGG---CUGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 40174 0.66 0.605258
Target:  5'- gUGGUGCgCGUCgaacUGCCGGCcaaGGCCCg -3'
miRNA:   3'- -ACUAUG-GCAGga--GCGGCUGca-UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.