miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26528 5' -55.9 NC_005357.1 + 13399 0.69 0.466897
Target:  5'- gGGUAUCGaCCUgGCCGaagcGCGgcGCCUg -3'
miRNA:   3'- aCUAUGGCaGGAgCGGC----UGCauCGGG- -5'
26528 5' -55.9 NC_005357.1 + 13523 0.71 0.330265
Target:  5'- cGGUuuGCCGUCCgCGCCGAacUGUcGGCCg -3'
miRNA:   3'- aCUA--UGGCAGGaGCGGCU--GCA-UCGGg -5'
26528 5' -55.9 NC_005357.1 + 14194 0.68 0.528107
Target:  5'- cUGGcGCaGUCCgacccgcgcguggUCGUCGGCGUGGCCg -3'
miRNA:   3'- -ACUaUGgCAGG-------------AGCGGCUGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 14843 0.66 0.638383
Target:  5'- cGAUGCCGUuggcggCCagCGCCGcACGcugGGCgCCu -3'
miRNA:   3'- aCUAUGGCA------GGa-GCGGC-UGCa--UCG-GG- -5'
26528 5' -55.9 NC_005357.1 + 15420 0.71 0.330265
Target:  5'- cGGUACauaUCCgCGCCGcUGUAGCCCc -3'
miRNA:   3'- aCUAUGgc-AGGaGCGGCuGCAUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 16165 0.71 0.355109
Target:  5'- cGA-GCCGaCCagGCCGGCGgguGCCCg -3'
miRNA:   3'- aCUaUGGCaGGagCGGCUGCau-CGGG- -5'
26528 5' -55.9 NC_005357.1 + 16407 0.71 0.363677
Target:  5'- uUGAUGCCa---UCGCCGAgGaAGCCCu -3'
miRNA:   3'- -ACUAUGGcaggAGCGGCUgCaUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 16517 0.72 0.314427
Target:  5'- aGGUGCCGguggUCUgGCCGAUaUAGCCg -3'
miRNA:   3'- aCUAUGGCa---GGAgCGGCUGcAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 16743 0.67 0.561454
Target:  5'- cGAcgugGCgGUCacgCUCGUgGGCGUAGCCa -3'
miRNA:   3'- aCUa---UGgCAG---GAGCGgCUGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 16780 0.66 0.605258
Target:  5'- aUGAcGCCGgcagaaCUCGCCGAgGUGGaCgCg -3'
miRNA:   3'- -ACUaUGGCag----GAGCGGCUgCAUC-GgG- -5'
26528 5' -55.9 NC_005357.1 + 17274 0.66 0.605258
Target:  5'- gGAUauuGCCGUCCacgaaGCCGGCGccgcgGGCgCg -3'
miRNA:   3'- aCUA---UGGCAGGag---CGGCUGCa----UCGgG- -5'
26528 5' -55.9 NC_005357.1 + 17733 0.69 0.477025
Target:  5'- cUGGcACCGauggacagCCUgggCGUgGACGUGGCCCg -3'
miRNA:   3'- -ACUaUGGCa-------GGA---GCGgCUGCAUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 18119 0.67 0.572339
Target:  5'- ---cGCCGUCCgguaCGUCGAacuUGUcGCCCg -3'
miRNA:   3'- acuaUGGCAGGa---GCGGCU---GCAuCGGG- -5'
26528 5' -55.9 NC_005357.1 + 18367 0.69 0.462877
Target:  5'- --uUGCCGgcggcgagguuggCCUUGCCGAUGgcGCCg -3'
miRNA:   3'- acuAUGGCa------------GGAGCGGCUGCauCGGg -5'
26528 5' -55.9 NC_005357.1 + 18480 0.77 0.150242
Target:  5'- -aAUGCCGaCCUCGCCGGgCGUGcGCCUg -3'
miRNA:   3'- acUAUGGCaGGAGCGGCU-GCAU-CGGG- -5'
26528 5' -55.9 NC_005357.1 + 19064 0.71 0.363677
Target:  5'- cGAUcaGCgUGUCCUCGCCGAgGUcacgcgauugcaGGCCg -3'
miRNA:   3'- aCUA--UG-GCAGGAGCGGCUgCA------------UCGGg -5'
26528 5' -55.9 NC_005357.1 + 19271 0.66 0.626229
Target:  5'- cGAUGCUGgaaUCGCCGuagaacaGCGUGGUCg -3'
miRNA:   3'- aCUAUGGCaggAGCGGC-------UGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 19317 0.68 0.51856
Target:  5'- cGuUACCGcUgUCGCCGugGgcGCCg -3'
miRNA:   3'- aCuAUGGCaGgAGCGGCugCauCGGg -5'
26528 5' -55.9 NC_005357.1 + 21725 0.69 0.466897
Target:  5'- gGGUGcCCGUgCCUCGUCGucc-AGCCCa -3'
miRNA:   3'- aCUAU-GGCA-GGAGCGGCugcaUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 23032 0.68 0.48726
Target:  5'- gGAUGCUGgaaaCCUaCGCCGAaGUggacaaGGCCCu -3'
miRNA:   3'- aCUAUGGCa---GGA-GCGGCUgCA------UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.