Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26528 | 5' | -55.9 | NC_005357.1 | + | 1859 | 0.66 | 0.65384 |
Target: 5'- ---cGCCGUCUugcagguucagcccgUgGCCGGCGcUGGCCg -3' miRNA: 3'- acuaUGGCAGG---------------AgCGGCUGC-AUCGGg -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 2036 | 0.67 | 0.561454 |
Target: 5'- -cAUACCGgccgCCUCGgCGACGauggauucaagGGCCUg -3' miRNA: 3'- acUAUGGCa---GGAGCgGCUGCa----------UCGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 2203 | 0.74 | 0.231456 |
Target: 5'- gGAUGCCGacgcCCUCGUCGG-GUAGCaCCa -3' miRNA: 3'- aCUAUGGCa---GGAGCGGCUgCAUCG-GG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 3758 | 0.69 | 0.456881 |
Target: 5'- cGGUGCCG-CC--GCUgGACGUAGCCUc -3' miRNA: 3'- aCUAUGGCaGGagCGG-CUGCAUCGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 4258 | 0.68 | 0.51856 |
Target: 5'- cGGUGCCGgCCgucagCGCCGGCauggugaUGGCCg -3' miRNA: 3'- aCUAUGGCaGGa----GCGGCUGc------AUCGGg -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 4857 | 0.71 | 0.363677 |
Target: 5'- aGcgGCCagcuuccaaUCCUCGCCGGCG-AGCCa -3' miRNA: 3'- aCuaUGGc--------AGGAGCGGCUGCaUCGGg -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 6422 | 0.66 | 0.627334 |
Target: 5'- cGAacUCGUCCUCGCUcGCGacaccaccGCCCg -3' miRNA: 3'- aCUauGGCAGGAGCGGcUGCau------CGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 6542 | 0.69 | 0.466897 |
Target: 5'- cGAUGCUGg---CGuuGACGUagcAGCCCg -3' miRNA: 3'- aCUAUGGCaggaGCggCUGCA---UCGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 7289 | 0.67 | 0.561454 |
Target: 5'- cGggGCCGUagugCUCGCgGAUGgcGCCg -3' miRNA: 3'- aCuaUGGCAg---GAGCGgCUGCauCGGg -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 8041 | 0.73 | 0.27737 |
Target: 5'- ---cGCCGUCCUUGCCGcCGUccaugacgcgcGCCCa -3' miRNA: 3'- acuaUGGCAGGAGCGGCuGCAu----------CGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 8166 | 0.69 | 0.427548 |
Target: 5'- aUGAUGCgGcCCaggaaggCGCUGGCGUccuGCCCg -3' miRNA: 3'- -ACUAUGgCaGGa------GCGGCUGCAu--CGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 8231 | 0.71 | 0.363677 |
Target: 5'- cGcgGCCGUgcCCUCGUCGGCGaAGUCg -3' miRNA: 3'- aCuaUGGCA--GGAGCGGCUGCaUCGGg -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 8512 | 0.68 | 0.48726 |
Target: 5'- cGAUGCCcuugaUgUCGCCGGCGaacuuGCCCa -3' miRNA: 3'- aCUAUGGca---GgAGCGGCUGCau---CGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 8839 | 1.13 | 0.000401 |
Target: 5'- uUGAUACCGUCCUCGCCGACGUAGCCCa -3' miRNA: 3'- -ACUAUGGCAGGAGCGGCUGCAUCGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 8957 | 0.66 | 0.616289 |
Target: 5'- cGGUgGCCGUgCCgcgauaGCCaGCGUGGCCg -3' miRNA: 3'- aCUA-UGGCA-GGag----CGGcUGCAUCGGg -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 11453 | 0.72 | 0.322274 |
Target: 5'- aGAUcguccACCGUCa-CGCCGAaGUAGUCCg -3' miRNA: 3'- aCUA-----UGGCAGgaGCGGCUgCAUCGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 11498 | 0.68 | 0.505939 |
Target: 5'- cGAcACCGcaaagggcagcgCCUgCGCUGGCGUgaGGCCCu -3' miRNA: 3'- aCUaUGGCa-----------GGA-GCGGCUGCA--UCGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 12418 | 0.76 | 0.172368 |
Target: 5'- uUGAUGCCGUCCUugguggcgcUGUCGAUGUcGCCg -3' miRNA: 3'- -ACUAUGGCAGGA---------GCGGCUGCAuCGGg -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 12640 | 0.7 | 0.39936 |
Target: 5'- cUGcUGCCGUCCUuuggCGUCGGguCGUcGCCCa -3' miRNA: 3'- -ACuAUGGCAGGA----GCGGCU--GCAuCGGG- -5' |
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26528 | 5' | -55.9 | NC_005357.1 | + | 12688 | 0.68 | 0.51856 |
Target: 5'- cGAgGCCGagUUCuaCGGCGUGGCCg -3' miRNA: 3'- aCUaUGGCagGAGcgGCUGCAUCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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