miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26528 5' -55.9 NC_005357.1 + 40712 0.67 0.539863
Target:  5'- uUGGa--CGcCCUCGCCGGCacgccGGCCCa -3'
miRNA:   3'- -ACUaugGCaGGAGCGGCUGca---UCGGG- -5'
26528 5' -55.9 NC_005357.1 + 40174 0.66 0.605258
Target:  5'- gUGGUGCgCGUCgaacUGCCGGCcaaGGCCCg -3'
miRNA:   3'- -ACUAUG-GCAGga--GCGGCUGca-UCGGG- -5'
26528 5' -55.9 NC_005357.1 + 39590 0.68 0.529172
Target:  5'- cUGGUGCUGg---CGCCGcugcGCGUGGCCg -3'
miRNA:   3'- -ACUAUGGCaggaGCGGC----UGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 37555 0.71 0.363677
Target:  5'- aUGAUugCGUggCUCGCCGGCGaggauuggaagcUGGCCg -3'
miRNA:   3'- -ACUAugGCAg-GAGCGGCUGC------------AUCGGg -5'
26528 5' -55.9 NC_005357.1 + 36987 0.75 0.202718
Target:  5'- cGAUACCGaCCUCGCCcACGccGCCa -3'
miRNA:   3'- aCUAUGGCaGGAGCGGcUGCauCGGg -5'
26528 5' -55.9 NC_005357.1 + 36043 0.7 0.38124
Target:  5'- cGGgccgGCCGgccugcgCCUgauUGCCGACGUGGgCCg -3'
miRNA:   3'- aCUa---UGGCa------GGA---GCGGCUGCAUCgGG- -5'
26528 5' -55.9 NC_005357.1 + 34836 0.67 0.565802
Target:  5'- -cGUGCUGUCCaccgUCGCCGACGacuucguggacguGUCCa -3'
miRNA:   3'- acUAUGGCAGG----AGCGGCUGCau-----------CGGG- -5'
26528 5' -55.9 NC_005357.1 + 34435 0.66 0.660455
Target:  5'- ---gGCaCGUCCgaCGCCGugGUGcugcuGCCUg -3'
miRNA:   3'- acuaUG-GCAGGa-GCGGCugCAU-----CGGG- -5'
26528 5' -55.9 NC_005357.1 + 33097 0.77 0.142138
Target:  5'- gGAUGCCG-CCgcccgccgCGCCGACGUGcGCCg -3'
miRNA:   3'- aCUAUGGCaGGa-------GCGGCUGCAU-CGGg -5'
26528 5' -55.9 NC_005357.1 + 32636 0.66 0.627334
Target:  5'- cGGUcGCUGUCCUgucgaaguucggCGCCGcgaagcugcccgACGUgaAGCCCg -3'
miRNA:   3'- aCUA-UGGCAGGA------------GCGGC------------UGCA--UCGGG- -5'
26528 5' -55.9 NC_005357.1 + 32562 0.75 0.203261
Target:  5'- cGAUGCCGcUCCgacguaucaggacacCGCCGACGcugugaccaagcUGGCCCg -3'
miRNA:   3'- aCUAUGGC-AGGa--------------GCGGCUGC------------AUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 28878 0.66 0.605258
Target:  5'- -----aCGUCCUCGCUgcuGGCGUAGUUg -3'
miRNA:   3'- acuaugGCAGGAGCGG---CUGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 28666 0.74 0.213823
Target:  5'- cGGUGCCGgcggCCUCGCCagcGCGgcGCgCCa -3'
miRNA:   3'- aCUAUGGCa---GGAGCGGc--UGCauCG-GG- -5'
26528 5' -55.9 NC_005357.1 + 27893 0.66 0.616289
Target:  5'- cGcUGuuGUCCggCGCCGgcgACGUGGCUg -3'
miRNA:   3'- aCuAUggCAGGa-GCGGC---UGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 27814 0.66 0.627334
Target:  5'- ---aGCaCGUCCUCGCgCG-CGcuGCCCg -3'
miRNA:   3'- acuaUG-GCAGGAGCG-GCuGCauCGGG- -5'
26528 5' -55.9 NC_005357.1 + 25426 0.69 0.437203
Target:  5'- aUGAUuuCCGUCaugCGCUGcACGaAGCCCu -3'
miRNA:   3'- -ACUAu-GGCAGga-GCGGC-UGCaUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 24599 0.66 0.605258
Target:  5'- ---gGCgUGUCCUUGCCGGgGUAGgUCa -3'
miRNA:   3'- acuaUG-GCAGGAGCGGCUgCAUCgGG- -5'
26528 5' -55.9 NC_005357.1 + 24438 0.67 0.583274
Target:  5'- cGGUGCCGcgcgcggCCUcggcgacauugaCGCCGACGaccugcugcuUGGCCUg -3'
miRNA:   3'- aCUAUGGCa------GGA------------GCGGCUGC----------AUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 24246 0.7 0.398441
Target:  5'- cGAUGauGUCCUCGCgGcuugccaccuugaGCGUGGCgCCg -3'
miRNA:   3'- aCUAUggCAGGAGCGgC-------------UGCAUCG-GG- -5'
26528 5' -55.9 NC_005357.1 + 24023 0.75 0.208206
Target:  5'- ---cGCCacCUUCGCCGACGUGGCCg -3'
miRNA:   3'- acuaUGGcaGGAGCGGCUGCAUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.