miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26528 5' -55.9 NC_005357.1 + 8839 1.13 0.000401
Target:  5'- uUGAUACCGUCCUCGCCGACGUAGCCCa -3'
miRNA:   3'- -ACUAUGGCAGGAGCGGCUGCAUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 33097 0.77 0.142138
Target:  5'- gGAUGCCG-CCgcccgccgCGCCGACGUGcGCCg -3'
miRNA:   3'- aCUAUGGCaGGa-------GCGGCUGCAU-CGGg -5'
26528 5' -55.9 NC_005357.1 + 18480 0.77 0.150242
Target:  5'- -aAUGCCGaCCUCGCCGGgCGUGcGCCUg -3'
miRNA:   3'- acUAUGGCaGGAGCGGCU-GCAU-CGGG- -5'
26528 5' -55.9 NC_005357.1 + 12418 0.76 0.172368
Target:  5'- uUGAUGCCGUCCUugguggcgcUGUCGAUGUcGCCg -3'
miRNA:   3'- -ACUAUGGCAGGA---------GCGGCUGCAuCGGg -5'
26528 5' -55.9 NC_005357.1 + 36987 0.75 0.202718
Target:  5'- cGAUACCGaCCUCGCCcACGccGCCa -3'
miRNA:   3'- aCUAUGGCaGGAGCGGcUGCauCGGg -5'
26528 5' -55.9 NC_005357.1 + 32562 0.75 0.203261
Target:  5'- cGAUGCCGcUCCgacguaucaggacacCGCCGACGcugugaccaagcUGGCCCg -3'
miRNA:   3'- aCUAUGGC-AGGa--------------GCGGCUGC------------AUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 24023 0.75 0.208206
Target:  5'- ---cGCCacCUUCGCCGACGUGGCCg -3'
miRNA:   3'- acuaUGGcaGGAGCGGCUGCAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 28666 0.74 0.213823
Target:  5'- cGGUGCCGgcggCCUCGCCagcGCGgcGCgCCa -3'
miRNA:   3'- aCUAUGGCa---GGAGCGGc--UGCauCG-GG- -5'
26528 5' -55.9 NC_005357.1 + 2203 0.74 0.231456
Target:  5'- gGAUGCCGacgcCCUCGUCGG-GUAGCaCCa -3'
miRNA:   3'- aCUAUGGCa---GGAGCGGCUgCAUCG-GG- -5'
26528 5' -55.9 NC_005357.1 + 8041 0.73 0.27737
Target:  5'- ---cGCCGUCCUUGCCGcCGUccaugacgcgcGCCCa -3'
miRNA:   3'- acuaUGGCAGGAGCGGCuGCAu----------CGGG- -5'
26528 5' -55.9 NC_005357.1 + 16517 0.72 0.314427
Target:  5'- aGGUGCCGguggUCUgGCCGAUaUAGCCg -3'
miRNA:   3'- aCUAUGGCa---GGAgCGGCUGcAUCGGg -5'
26528 5' -55.9 NC_005357.1 + 11453 0.72 0.322274
Target:  5'- aGAUcguccACCGUCa-CGCCGAaGUAGUCCg -3'
miRNA:   3'- aCUA-----UGGCAGgaGCGGCUgCAUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 13523 0.71 0.330265
Target:  5'- cGGUuuGCCGUCCgCGCCGAacUGUcGGCCg -3'
miRNA:   3'- aCUA--UGGCAGGaGCGGCU--GCA-UCGGg -5'
26528 5' -55.9 NC_005357.1 + 15420 0.71 0.330265
Target:  5'- cGGUACauaUCCgCGCCGcUGUAGCCCc -3'
miRNA:   3'- aCUAUGgc-AGGaGCGGCuGCAUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 16165 0.71 0.355109
Target:  5'- cGA-GCCGaCCagGCCGGCGgguGCCCg -3'
miRNA:   3'- aCUaUGGCaGGagCGGCUGCau-CGGG- -5'
26528 5' -55.9 NC_005357.1 + 16407 0.71 0.363677
Target:  5'- uUGAUGCCa---UCGCCGAgGaAGCCCu -3'
miRNA:   3'- -ACUAUGGcaggAGCGGCUgCaUCGGG- -5'
26528 5' -55.9 NC_005357.1 + 4857 0.71 0.363677
Target:  5'- aGcgGCCagcuuccaaUCCUCGCCGGCG-AGCCa -3'
miRNA:   3'- aCuaUGGc--------AGGAGCGGCUGCaUCGGg -5'
26528 5' -55.9 NC_005357.1 + 8231 0.71 0.363677
Target:  5'- cGcgGCCGUgcCCUCGUCGGCGaAGUCg -3'
miRNA:   3'- aCuaUGGCA--GGAGCGGCUGCaUCGGg -5'
26528 5' -55.9 NC_005357.1 + 37555 0.71 0.363677
Target:  5'- aUGAUugCGUggCUCGCCGGCGaggauuggaagcUGGCCg -3'
miRNA:   3'- -ACUAugGCAg-GAGCGGCUGC------------AUCGGg -5'
26528 5' -55.9 NC_005357.1 + 19064 0.71 0.363677
Target:  5'- cGAUcaGCgUGUCCUCGCCGAgGUcacgcgauugcaGGCCg -3'
miRNA:   3'- aCUA--UG-GCAGGAGCGGCUgCA------------UCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.