Results 41 - 60 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26530 | 3' | -60 | NC_005357.1 | + | 11088 | 0.69 | 0.260867 |
Target: 5'- gGGUCGcgcGCgAGCAccuugUCGGCUgCGGCCa -3' miRNA: 3'- -CCGGC---CGgUCGUca---AGCCGAaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 11124 | 0.67 | 0.366553 |
Target: 5'- uGGUucaaaCGuGCgAGCAGUUCGGCcugcugcUgGGCCg -3' miRNA: 3'- -CCG-----GC-CGgUCGUCAAGCCGa------AgCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 11126 | 0.68 | 0.288286 |
Target: 5'- aGCCgGGCCAccacGCGGUcgccaGGCUUCGcuGCCa -3' miRNA: 3'- cCGG-CCGGU----CGUCAag---CCGAAGC--CGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 11337 | 0.67 | 0.349787 |
Target: 5'- cGCCGGCCuGCaccgaGGUgagcagCGGCaccaGGCCc -3' miRNA: 3'- cCGGCCGGuCG-----UCAa-----GCCGaag-CCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 11839 | 0.68 | 0.325677 |
Target: 5'- cGGCCGcGCC-GCGGUU-GGCcUgGGCg -3' miRNA: 3'- -CCGGC-CGGuCGUCAAgCCGaAgCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 12009 | 0.85 | 0.017716 |
Target: 5'- cGUCGGCCAGCAGcgCGGCcgUGGCCg -3' miRNA: 3'- cCGGCCGGUCGUCaaGCCGaaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 12287 | 0.68 | 0.302824 |
Target: 5'- uGCUGGcCCAGCGugcCGGCUaCGGCg -3' miRNA: 3'- cCGGCC-GGUCGUcaaGCCGAaGCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 12303 | 0.74 | 0.114219 |
Target: 5'- aGGCCGG-CGGCGuGUUCuGGCg-CGGCCu -3' miRNA: 3'- -CCGGCCgGUCGU-CAAG-CCGaaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 12418 | 0.69 | 0.254353 |
Target: 5'- gGGCgCGGCCGuGCAGUUgGaGCacgaUGGCCc -3' miRNA: 3'- -CCG-GCCGGU-CGUCAAgC-CGaa--GCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13014 | 0.69 | 0.274303 |
Target: 5'- aGGCCGcGCagcGCAGU--GGCgaCGGCCu -3' miRNA: 3'- -CCGGC-CGgu-CGUCAagCCGaaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13126 | 0.68 | 0.306546 |
Target: 5'- uGCCGGCCAggcgugggucguucuGCAacugcgccucgaugUCGGCcagugUCGGCCg -3' miRNA: 3'- cCGGCCGGU---------------CGUca------------AGCCGa----AGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13135 | 0.68 | 0.31792 |
Target: 5'- gGGCaagGGCCAGCAGUUCG---UC-GCCu -3' miRNA: 3'- -CCGg--CCGGUCGUCAAGCcgaAGcCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13180 | 0.68 | 0.31792 |
Target: 5'- cGGCCGGCCuuaugAGUGGa-CGGacuuCUUCGGCg -3' miRNA: 3'- -CCGGCCGG-----UCGUCaaGCC----GAAGCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13311 | 0.7 | 0.212438 |
Target: 5'- gGGCCGGCguuguaGGCGGcguaGGCUuUCGGCa -3' miRNA: 3'- -CCGGCCGg-----UCGUCaag-CCGA-AGCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13443 | 0.71 | 0.186253 |
Target: 5'- aGGCCcGCCAGCuuggCGGCcUCGGgCg -3' miRNA: 3'- -CCGGcCGGUCGucaaGCCGaAGCCgG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13512 | 0.69 | 0.281225 |
Target: 5'- aGGCCcuGGCUuugugggacgAGUGG-UCGGCgaCGGCCa -3' miRNA: 3'- -CCGG--CCGG----------UCGUCaAGCCGaaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13575 | 0.66 | 0.420071 |
Target: 5'- uGGCgCGGCgCugGGaCAGcUUCGGCaagucCGGCCg -3' miRNA: 3'- -CCG-GCCG-G--UC-GUC-AAGCCGaa---GCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13856 | 0.66 | 0.39272 |
Target: 5'- cGCCuGCCGGaa----GGUUUCGGCCu -3' miRNA: 3'- cCGGcCGGUCgucaagCCGAAGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 14133 | 0.75 | 0.096641 |
Target: 5'- cGUCGGCCAGCGGcUUGcCUUCcGGCCg -3' miRNA: 3'- cCGGCCGGUCGUCaAGCcGAAG-CCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 14267 | 0.69 | 0.260867 |
Target: 5'- uGGuuGGCCugcuGCAccaugcugUCGGCgaugCGGCCc -3' miRNA: 3'- -CCggCCGGu---CGUca------AGCCGaa--GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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