miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 3' -60 NC_005357.1 + 6181 0.7 0.244209
Target:  5'- aGGCCGGUCuugccgcagcguuuGCAGgugaCGGCgcgCGGCUc -3'
miRNA:   3'- -CCGGCCGGu-------------CGUCaa--GCCGaa-GCCGG- -5'
26530 3' -60 NC_005357.1 + 6395 0.76 0.086378
Target:  5'- aGGCCGGCCGGCc---CGGUguagucgCGGCCc -3'
miRNA:   3'- -CCGGCCGGUCGucaaGCCGaa-----GCCGG- -5'
26530 3' -60 NC_005357.1 + 6506 0.66 0.420071
Target:  5'- uGGuuGGCgAGCAGUuucUUGGCgaguuuUUCGGg- -3'
miRNA:   3'- -CCggCCGgUCGUCA---AGCCG------AAGCCgg -5'
26530 3' -60 NC_005357.1 + 6802 0.66 0.40443
Target:  5'- cGCCuGGUCAGCcagggacacggcgcgGGUuucgucguugcccUCGGCgaCGGCCu -3'
miRNA:   3'- cCGG-CCGGUCG---------------UCA-------------AGCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 7265 0.75 0.108051
Target:  5'- cGCCGGCCuuguGCAGcuucUCGGCggUGGUCg -3'
miRNA:   3'- cCGGCCGGu---CGUCa---AGCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 7432 1.12 0.000138
Target:  5'- uGGCCGGCCAGCAGUUCGGCUUCGGCCu -3'
miRNA:   3'- -CCGGCCGGUCGUCAAGCCGAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 7706 0.68 0.308795
Target:  5'- cGGCCGGCUugccgaugaacuGCAGcgcacgcUCGGCggcCGGCUu -3'
miRNA:   3'- -CCGGCCGGu-----------CGUCa------AGCCGaa-GCCGG- -5'
26530 3' -60 NC_005357.1 + 7858 0.87 0.012473
Target:  5'- aGGCgGGCUucGCGGUUCaGGCUUCGGCCg -3'
miRNA:   3'- -CCGgCCGGu-CGUCAAG-CCGAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 8236 0.69 0.254353
Target:  5'- cGGCC-GUCAGCAGcUUGcGCUUcaagCGGCCc -3'
miRNA:   3'- -CCGGcCGGUCGUCaAGC-CGAA----GCCGG- -5'
26530 3' -60 NC_005357.1 + 8413 0.66 0.420071
Target:  5'- cGGCCagGGCCGuGCGcuugUCuacggccuugaGGCUUUGGCCc -3'
miRNA:   3'- -CCGG--CCGGU-CGUca--AG-----------CCGAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 8650 0.7 0.241726
Target:  5'- cGCCGGCCuucaucgcGCGG-UCGGCauugCGuGCCg -3'
miRNA:   3'- cCGGCCGGu-------CGUCaAGCCGaa--GC-CGG- -5'
26530 3' -60 NC_005357.1 + 8802 0.69 0.254353
Target:  5'- cGGCCGcGCCGGuCAGUaccgaUCuGCUgggUCgGGCCa -3'
miRNA:   3'- -CCGGC-CGGUC-GUCA-----AGcCGA---AG-CCGG- -5'
26530 3' -60 NC_005357.1 + 8848 0.75 0.099382
Target:  5'- cGCgGGCCAGCGcgUUGGCcUCGGUCg -3'
miRNA:   3'- cCGgCCGGUCGUcaAGCCGaAGCCGG- -5'
26530 3' -60 NC_005357.1 + 9201 0.68 0.310302
Target:  5'- uGGCCuGCuCGGCGGcgCGGCgcacguucugCGGCg -3'
miRNA:   3'- -CCGGcCG-GUCGUCaaGCCGaa--------GCCGg -5'
26530 3' -60 NC_005357.1 + 9275 0.66 0.426617
Target:  5'- cGGUCGGcCCGGUAcacCGGCUgcgcauugacuuccUCGGCg -3'
miRNA:   3'- -CCGGCC-GGUCGUcaaGCCGA--------------AGCCGg -5'
26530 3' -60 NC_005357.1 + 9507 0.71 0.18137
Target:  5'- uGGCCGaacaGCCAGCcGUgcaGGCcgUGGCCg -3'
miRNA:   3'- -CCGGC----CGGUCGuCAag-CCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 9907 0.68 0.311058
Target:  5'- uGGCCGGCaucacCAGCcugcacgggcgcggAGUUCucggccuuggauucgGGCgcaUCGGCCg -3'
miRNA:   3'- -CCGGCCG-----GUCG--------------UCAAG---------------CCGa--AGCCGG- -5'
26530 3' -60 NC_005357.1 + 10732 0.68 0.310302
Target:  5'- gGGCUGGUcaggcggugcugCAGCAGUUacUGGUgcuugUGGCCg -3'
miRNA:   3'- -CCGGCCG------------GUCGUCAA--GCCGaa---GCCGG- -5'
26530 3' -60 NC_005357.1 + 10770 0.68 0.31792
Target:  5'- -uUCGGCCcGCAGUUC---UUCGGCCu -3'
miRNA:   3'- ccGGCCGGuCGUCAAGccgAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 10836 0.71 0.191252
Target:  5'- cGGCuCGGUCuugagguggucgAGCAGgcccugcgUGGCUUCGGUCg -3'
miRNA:   3'- -CCG-GCCGG------------UCGUCaa------GCCGAAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.